Input parameters:
Query = ENSP00000381195 (Len=228)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000381195, Len=228):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 80
WD40-rpts (_________________WD 1_________________) (_______________
Query 81 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAED 160
WD40-rpts __WD 2_________________)(___________________WD 3___________________)(___________
Query 161 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQGS 228
WD40-rpts _______________WD 4_________________________)
4 WD40-repeats found in QUERY=ENSP00000381195 (Len=228):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 19-58 6.60 387.10 0.00038 22.5% 47.76
WD 2: Seg 6 65-104 8.17 452.26 5.0e-05 32.5% 51.91
WD 3: Seg 10 105-148 7.61 429.05 0.00010 30.0% 50.01
WD 4: Seg 14 149-205 6.81 396.14 0.00029 30.0% 54.98
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 19-58 -V----------------DA---KAIFTGHSAVVEDVAWHLLHE-S-LFGSVADDQKLMIWD
WD 2 65-104 -S----------------KP---SHLVDAHTAEVNCLSFNPYSEFI-L-ATGSADKTVALWD
WD 3 105-148 LR----------------NLKLKLHTFESHKDEIFQVHWSPHNE-TIL-ASSGTDRRLNVWD
WD 4 149-205 LSKIGEEQSAEDAEDGPPEL---LFIHGGHTAKISDFSWNPNEPWV-I-CSVSEDNIMQIWQ
WD40 Template TG----------------EC---LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD