WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSP00000381357 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000381357 (Len=1457) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000381357, Len=1457): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGNSLVLPIVLWGRKAPTHCISAVLLTDDGATIVTGCHDGQICLWDLSVELQINPRALLFGHTASITCLSKACASSDKQ 80
WD40-rpts (_________________WD 1_________________)(_____________________WD 2_______
Query 81 YIVSASESGEMCLWDVSDGRCIEFTKLACTHTGIQFYQFSVGNQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDW 160
WD40-rpts ______________) (_______________WD 3_______________) (______________
Query 161 ISSMSIIRSHRTQEDTVVALSVTGILKVWIVTSEISDMQDTEPIFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRV 240
WD40-rpts ______WD 4___________________)(______________WD 5______________) (_____
Query 241 FDAGDYSLLCSGPSENGQTWTGGDFVSSDKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHILLDRKD 320
WD40-rpts _____________WD 6_________________) (__________________WD 7_________________)(__
Query 321 KELLICPPVTRFFYGCREYFHKLLIQGDSSGRLNIWNISDTADKQGSEEGLAMTTSISLQEAFDKLNPCPAGIIDQLSVI 400
WD40-rpts _______________WD 8_________________)
Query 401 PNSNEPLKVTASVYIPAHGRLVCGREDGSIVIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARY 480
WD40-rpts (______________WD 9______________) (________________________WD10_______
Query 481 DQRYLISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHL 560
WD40-rpts _________________) (____________________WD11___________________) (__________
Query 561 FPIQVIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAAL 640
WD40-rpts _______WD12________________) (_________________WD13________________)(_________
Query 641 KNMAHHKLQTLATNLLASEASDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENL 720
WD40-rpts ________WD14________________) (_________________WD15__
Query 721 QKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYNLTMDTA 800
WD40-rpts ______________)________________WD16________________)
Query 801 KLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGYNQPACKLSHGKTEVGRKLPASEGVGKGTY 880
WD40-rpts
Query 881 GVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPSTPDLSKARGSPPTSSNIVQGQIKQGWSQLAAMHCV 960
WD40-rpts (___________
Query 961 MLPDLLGLDKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKEAIDAWAPYLPQYIDHVISPGVTSEAAQT 1040
WD40-rpts _____________________________WD17________________________________________)
Query 1041 ITTAPDASGPEAKVQEEEHDLVDDDITTGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSS 1120
WD40-rpts
Query 1121 SQIPEGFGLTSGGSNYSLARHTCKALTFLLLQPPSPKLPPHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADAE 1200
WD40-rpts
Query 1201 KQLANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAANTQSQQNMHTTTLARAKGEILRVIEIL 1280
WD40-rpts
Query 1281 IEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERNHRIAVGARHGSVALYDIRTGKCQTIHGH 1360
WD40-rpts (______________WD18______________) (_________
Query 1361 KGPITAVAFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSHNALKLARLIWTSN 1440
WD40-rpts ________WD19_________________)(___________________WD20___________________)
Query 1441 RNVILMAHDGKEHRFMV 1457
WD40-rpts
 20 WD40-repeats found in QUERY=ENSP00000381357 (Len=1457): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-47 7.68 431.74 9.4e-05 30.0% 54.28 WD 2: Seg 5 48-95 7.25 414.06 0.00016 40.0% 45.79 WD 3: Seg 9 107-142 5.10 325.51 0.00255 25.0% 44.00 WD 4: Seg 12 146-190 5.50 341.67 0.00155 30.0% 53.14 WD 5: Seg 16 191-224 2.92 235.45 0.04101 12.5% 18.39 WD 6: Seg 19 235-275 5.93 359.70 0.00088 12.5% 50.49 WD 7: Seg 23 277-317 6.25 372.84 0.00059 15.0% 40.33 WD 8: Seg 27 318-357 5.61 346.42 0.00133 12.5% 46.40 WD 9: Seg 33 401-434 6.59 386.81 0.00038 30.0% 41.98 WD10: Seg 36 445-498 7.64 430.44 9.8e-05 40.0% 48.03 WD11: Seg 40 502-546 6.49 382.67 0.00043 17.5% 55.50 WD12: Seg 44 550-588 8.92 483.25 1.9e-05 27.5% 53.79 WD13: Seg 48 592-630 7.03 404.88 0.00022 12.5% 52.17 WD14: Seg 52 631-669 4.36 294.96 0.00658 12.5% 18.86 WD15: Seg 57 697-735 6.09 366.30 0.00072 20.0% 47.94 WD16: Seg 60 734-772 3.20 246.67 0.02912 12.5% 0.77 WD17: Seg 66 949-1034 3.75 269.42 0.01448 7.5% -3.26 WD18: Seg 68 1315-1348 6.47 381.88 0.00044 15.0% 44.97 WD19: Seg 71 1351-1390 8.06 447.73 5.7e-05 35.0% 53.08 WD20: Seg 75 1391-1434 6.59 386.88 0.00038 7.5% 47.68Multiple sequence alignment of 20 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-47 LP----IVL--------W-----GRKAPTHC--ISAVL---LT----------DD--------------------------------G------AT----IVTGC--H-DGQICLWD WD 2 48-95 LS----VEL--------QINPRALLFGHTAS--ITCLSKACAS----------SD--------------------------------K------QY----IVSAS--E-SGEMCLWD WD 3 107-142 -------LA--------C-----THTGIQFY--QFSVG---NQ----------RE--------------------------------G------RL----LCHGH----YPEILVVD WD 4 146-190 -L----EVL--------Y-----SLVSKISPDWISSMS---II----------RS--------------------------------H------RTQEDTVVALS--V-TGILKVWI WD 5 191-224 -----------------V-----TSEISDMQ--DTEPI---FE----------EE--------------------------------S------KP----IYC-Q--N-CQSISFCA WD 6 235-275 -S----KYW--------R-----VFDAGDYS--LLCSG---PS----------EN--------------------------------G------QT----WTGGDFVS-SDKVIIWT WD 7 277-317 NG---QSYI--------Y-----KLPASCLP--ASDSF---RS----------DV--------------------------------G------KA----VENLI--P-PVQHILLD WD 8 318-357 RK----DKE--------L-----LICPPVTR--FFYGC---RE----------YF--------------------------------H------KL----LIQGD--S-SGRLNIWN WD 9 401-434 -----------------------PNSNEPLK--VTASV---YI----------PA--------------------------------H------GR----LVCGR--E-DGSIVIVP WD10 445-498 QG----EHMLRRGWPPHR-----TLRGHRNK--VTCLL---YP----HQVSARYD--------------------------------Q------RY----LISGG--V-DFSVIIWD WD11 502-546 -G----EMK--------H-----IFCVHGGE--ITQLL---VP----------PE--------------------------------NCSARVQHC----ICSVA--S-DHSVGLLS WD12 550-588 -K----KCI--------M-----LASRHLFP--IQVIK---WR----------PS--------------------------------D------DY----LVVGC--S-DGSVYVWQ WD13 592-630 -G----ALD--------R-----CVMGITAV--EILNA---CD----------EA--------------------------------V------PA----AVDSL--S-HPAVNLKQ WD14 631-669 -A----MTR--------R-----SLAALKNM--AHHKL---QT----------LA--------------------------------T------NL----LASEA--S-DKGNLPKY WD15 697-735 -A----LII--------Q-----LLTEEASR--PNTAL---IS----------PE--------------------------------N------LQ----KASGS--S-DKGGSFLT WD16 734-772 -L----TGK--------R-----AAVLFQQV--KETIK---EN----------IK--------------------------------E------HL----LDDEE--E-DEEIMRQR WD17 949-1034 QGWSQLAAM--------H-----CVMLPDLL--GLDKF---RPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKEAIDAWA------PY----LPQYI--D-HVISPGVT WD18 1315-1348 -----------------------ECFPAICR--FYMVS---YY----------ER--------------------------------N------HR----IAVGA--R-HGSVALYD WD19 1351-1390 -T----GKC--------Q-----TIHGHKGP--ITAVA---FA----------PD--------------------------------G------RY----LATYS--NTDSHISFWQ WD20 1391-1434 MNTSLLGSI--------G-----MLNSAPQL--RCIKT---YQ----------VP--------------------------------P------VQ----PASPG--S-HNALKLAR WD40 Template TG----ECL--------R-----TLSGHTSG--VTSVS---FS----------PD--------------------------------G------KR----LVSGS--E-DGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |