WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000383366    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000383366 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000383366, Len=404):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XIESGSRLMSSEDLAEIPQLQKLSIPHGFQNKEAASSPTPSITLSQVPDLQPGSQLFTEIHLAKIEKMFEEDINSTGALG 80  
WD40-rpts                                                                                      

Query       81 MDAFIKAMKKVLSSVSDEMLKELFLKVDSDCEGFVTWQKYVDYMMREFQGKEDMRKSQYRLHFYLPMTVVPLNHGCEVVK 160 
WD40-rpts                                                                          (___________

Query      161 VVFLIHRFKKIGCFLTVTKDGILQFWSESFSLMSSFRLNQTQQLYNQPMWVIDMVCLHNMNLVAVASTRQKIDFFDISDH 240 
WD40-rpts      ______WD 1________________)             (_______________WD 2_______________)    

Query      241 KCVRAFTFVDLDSCALVMDYWSDYHRGVFCYGDAKGNVIVFTSENMTSGLFNPRILPRASKWDHWIKVSLQKLLNEKSAL 320 
WD40-rpts                                                                                      

Query      321 HRSYRLKALHPNWCEQVKFIPQMNVVVSCSAIEKSSLVLTILPAKASKKPRLSVLRLRKGILCFDYCPDRNFLVTGGYDA 400 
WD40-rpts      (_________________WD 3________________)   (__________________WD 4_______________

Query      401 FIRL 404 
WD40-rpts      ___)



4 WD40-repeats found in QUERY=ENSP00000383366 (Len=404):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   149-187      5.11  325.93  0.00252       12.5%     33.14
  WD 2:  Seg  5   201-236      5.56  344.53  0.00141       12.5%     44.23
  WD 3:  Seg 13   321-359      6.16  369.28  0.00066       20.0%     44.26
  WD 4:  Seg 17   363-404      3.79  271.38  0.01363       20.0%     27.46
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  149-187    -VVPLNHGC----EVVKVVFLIHRFKKIGCFLTVTKDGILQFWS
   WD 2  201-236    ----TQQLY----NQPMWVIDMVCLHNMNLVAVASTRQKIDFFD
   WD 3  321-359    -HRSYRLKA----LHPNWCEQVKFIPQMNVVVSCSAIEKSSLVL
   WD 4  363-404    PAKASKKPRLSVLRLRKGILCFDYCPDRNFLVTGGYDAFIRL--

   WD40 Template    TGECLRTLS----GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019