WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000383811    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000383811 (Len=827)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000383811, Len=827):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80  
WD40-rpts                              (_____________WD 1_____________)    (_________________WD

Query       81 NKVNPLLICSASLDYVIMWNLDECREKVLQGLVPRGTVMGSLLGKVLCLQLSLDDHVVAVCAGNKIFMLDIETQAVRAEL 160 
WD40-rpts       2_________________)         (__________________WD 3_________________)   (______

Query      161 QGHLGPVTAVEFCPWRAGTLISASEDRGFKVWDHCTGSLIYSSSVLSAYPLLSLFIDAESRQLVTGCADGQLWIFSLMDG 240 
WD40-rpts      ___________WD 4_________________)   (_________________WD 5_________________)   (

Query      241 HHYRRVARVDLRKKTETFSTRRVKSGLCSQPEESQLPSTSALGKGEQVEVTFPVLRLAPCDLSLIPNSACGCLSSENTRC 320 
WD40-rpts      ______________________WD 6______________________)        (_______________WD 7___

Query      321 VWIGSSVGLFVFNLANLEVEAALYYKDFQSLSILLAGSCALRNRTADQKVLCLLASLFGGKIAVLEINPAALVRAQQCPS 400 
WD40-rpts      ____________)   (_________________WD 8________________)  (______________________

Query      401 MGQSLSVPASSCVLPTSPLYLGIAKEKSTKAASEQRRAARNVMKDQRLVFHSKVRSSGYASAPHVTMFSPKTNIKSEGKG 480 
WD40-rpts      ___WD 9________________________)                    (_______________WD10________

Query      481 SSRSRSSCAREAYPVECAVPTKPGPQVAAAPTCTRVCCIQYSGDGQWLACGLANHLLLVFDASLTGTPAVFSGHDGAVNA 560 
WD40-rpts      _______)(________________________WD11_______________________)   (_______________

Query      561 VCWSQDRRWLLSAARDGTLRMWSARGAELALLLGKDMFSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDEIKRYK 640 
WD40-rpts      __WD12________________)(____________________WD13___________________)           (

Query      641 QKSKSKLICRLSTTGAVDMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAVIAEAHSRPVHQICQNKGSSFTTQQP 720 
WD40-rpts      _____________________WD14____________________)(________________________WD15_____

Query      721 QAYNLFLTTAIGDGMRLWDLRTLRCERHFEGHPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTV 800 
WD40-rpts      __________________)   (__________________WD16_________________)   (_____________

Query      801 TGVAFNPSAPQLATATLDGKLQLFLAE 827 
WD40-rpts      ____WD17________________)  



17 WD40-repeats found in QUERY=ENSP00000383811 (Len=827):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-56       4.95  319.03  0.00312        7.5%     42.26
  WD 2:  Seg  5    61-100      5.39  337.21  0.00178       27.5%     47.01
  WD 3:  Seg 10   110-150      5.43  339.14  0.00167       17.5%     46.55
  WD 4:  Seg 14   154-193      8.44  463.45  3.5e-05       42.5%     56.94
  WD 5:  Seg 18   197-236      7.00  403.91  0.00022       20.0%     56.73
  WD 6:  Seg 22   240-289      4.19  287.82  0.00820       22.5%     30.99
  WD 7:  Seg 26   298-333      3.35  253.09  0.02392       15.0%     45.87
  WD 8:  Seg 30   337-375      5.58  345.26  0.00138        7.5%     42.90
  WD 9:  Seg 34   378-432      3.93  277.04  0.01144       12.5%     33.26
  WD10:  Seg 38   453-488      7.10  408.01  0.00020       17.5%     29.87
  WD11:  Seg 40   489-541      7.09  407.47  0.00020       22.5%     50.29
  WD12:  Seg 44   545-583      9.47  505.99  9.4e-06       32.5%     52.60
  WD13:  Seg 48   584-628      5.41  338.12  0.00173       15.0%     51.39
  WD14:  Seg 53   640-686      4.88  316.10  0.00342       15.0%     32.42
  WD15:  Seg 57   687-739      5.19  329.00  0.00229       10.0%     54.71
  WD16:  Seg 61   743-783      7.73  434.13  8.8e-05       30.0%     55.67
  WD17:  Seg 65   787-825      9.19  494.10  1.4e-05       30.0%     55.23
Multiple sequence alignment of 17 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-56     ----------------------------------VESKE-S--VSHVQLA-----------C-SM---------------QDCAFPLDGTELCIWN
   WD 2   61-100    -S----HQ-------L-------------L--ILRGHHQ-P--ITAMAFG---------NKV-NP---------------LLICSASLDYVI-MWN
   WD 3  110-150    QG----LV-------P-------------RGTVMGSLLG-K--VLCLQLS-----------L-DD---------------HVVAVCA-GNKIFMLD
   WD 4  154-193    -Q----AV-------R-------------A--ELQGHLG-P--VTAVEFC-----------PWRA---------------GTLISASEDRGFKVWD
   WD 5  197-236    -G----SL-------I-------------Y--SSSVLSAYP--LLSLFID-----------A-ES---------------RQLVTGCADGQLWIFS
   WD 6  240-289    -G----HH-------Y-------------R--RVARVDL-R--KKTETFSTRRVKSGLCSQP-EE---------------SQLPSTSALGKGEQVE
   WD 7  298-333    -------A-------P-------------C--DLSLIPN-S--ACGC-LS-----------S-EN---------------TRCVWIGSSVGLFVFN
   WD 8  337-375    -L----EV-------E-------------A--ALYYKDF-Q--SLSILLA-----------G-SC---------------ALRNRTADQKVLCLLA
   WD 9  378-432    FG----GK-------I-------------A--VLEINPA-A--LVRAQQC-----------P-SMGQSLSVPASSCVLPTSPLYLGIAKEKSTKAA
   WD10  453-488    ---------------K-------------V--RSSGYAS-A--PHVTMFS-----------P-KT---------------NIKSEGKGSSRSRSSC
   WD11  489-541    AR----EA-------YPVECAVPTKPGPQV--AAAPTCT-R--VCCIQYS-----------G-DG---------------QWLACGLANHLLLVFD
   WD12  545-583    -T----GT-------P-------------A--VFSGHDG-A--VNAVCWS-----------Q-DR---------------RWLLSAARDGTLRMWS
   WD13  584-628    ARGAELAL-------L-------------L--GKDMFSK-P--IQSAQFY-----------YIDA---------------FILLSSGPEFQLLRYH
   WD14  640-686    KQ----KSKSKLICRL-------------S--TTGAVDM-T--SLSAVND-----------F-YS---------------HIVLAAGRNRTVEVFD
   WD15  687-739    LN-AGCSA-------A-------------V--IAEAHSR-P--VHQICQN-----------K-GS-----SFTTQQPQAYNLFLTTAIGDGMRLWD
   WD16  743-783    -L----RC-------E-------------R--HFEGHPT-RGYPCGIAFS-----------P-CG---------------RFAACGAEDRHAYVYE
   WD17  787-825    -S----TF-------S-------------H--RLAGHTD-T--VTGVAFN-----------P-SA---------------PQLATATLDGKLQLFL

   WD40 Template    TG----EC-------L-------------R--TLSGHTS-G--VTSVSFS-----------P-DG---------------KRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019