Input parameters:
Query = ENSP00000383811 (Len=827)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000383811, Len=827):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80
WD40-rpts (_____________WD 1_____________) (_________________WD
Query 81 NKVNPLLICSASLDYVIMWNLDECREKVLQGLVPRGTVMGSLLGKVLCLQLSLDDHVVAVCAGNKIFMLDIETQAVRAEL 160
WD40-rpts 2_________________) (__________________WD 3_________________) (______
Query 161 QGHLGPVTAVEFCPWRAGTLISASEDRGFKVWDHCTGSLIYSSSVLSAYPLLSLFIDAESRQLVTGCADGQLWIFSLMDG 240
WD40-rpts ___________WD 4_________________) (_________________WD 5_________________) (
Query 241 HHYRRVARVDLRKKTETFSTRRVKSGLCSQPEESQLPSTSALGKGEQVEVTFPVLRLAPCDLSLIPNSACGCLSSENTRC 320
WD40-rpts ______________________WD 6______________________) (_______________WD 7___
Query 321 VWIGSSVGLFVFNLANLEVEAALYYKDFQSLSILLAGSCALRNRTADQKVLCLLASLFGGKIAVLEINPAALVRAQQCPS 400
WD40-rpts ____________) (_________________WD 8________________) (______________________
Query 401 MGQSLSVPASSCVLPTSPLYLGIAKEKSTKAASEQRRAARNVMKDQRLVFHSKVRSSGYASAPHVTMFSPKTNIKSEGKG 480
WD40-rpts ___WD 9________________________) (_______________WD10________
Query 481 SSRSRSSCAREAYPVECAVPTKPGPQVAAAPTCTRVCCIQYSGDGQWLACGLANHLLLVFDASLTGTPAVFSGHDGAVNA 560
WD40-rpts _______)(________________________WD11_______________________) (_______________
Query 561 VCWSQDRRWLLSAARDGTLRMWSARGAELALLLGKDMFSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDEIKRYK 640
WD40-rpts __WD12________________)(____________________WD13___________________) (
Query 641 QKSKSKLICRLSTTGAVDMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAVIAEAHSRPVHQICQNKGSSFTTQQP 720
WD40-rpts _____________________WD14____________________)(________________________WD15_____
Query 721 QAYNLFLTTAIGDGMRLWDLRTLRCERHFEGHPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTV 800
WD40-rpts __________________) (__________________WD16_________________) (_____________
Query 801 TGVAFNPSAPQLATATLDGKLQLFLAE 827
WD40-rpts ____WD17________________)
17 WD40-repeats found in QUERY=ENSP00000383811 (Len=827):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 25-56 4.95 319.03 0.00312 7.5% 42.26
WD 2: Seg 5 61-100 5.39 337.21 0.00178 27.5% 47.01
WD 3: Seg 10 110-150 5.43 339.14 0.00167 17.5% 46.55
WD 4: Seg 14 154-193 8.44 463.45 3.5e-05 42.5% 56.94
WD 5: Seg 18 197-236 7.00 403.91 0.00022 20.0% 56.73
WD 6: Seg 22 240-289 4.19 287.82 0.00820 22.5% 30.99
WD 7: Seg 26 298-333 3.35 253.09 0.02392 15.0% 45.87
WD 8: Seg 30 337-375 5.58 345.26 0.00138 7.5% 42.90
WD 9: Seg 34 378-432 3.93 277.04 0.01144 12.5% 33.26
WD10: Seg 38 453-488 7.10 408.01 0.00020 17.5% 29.87
WD11: Seg 40 489-541 7.09 407.47 0.00020 22.5% 50.29
WD12: Seg 44 545-583 9.47 505.99 9.4e-06 32.5% 52.60
WD13: Seg 48 584-628 5.41 338.12 0.00173 15.0% 51.39
WD14: Seg 53 640-686 4.88 316.10 0.00342 15.0% 32.42
WD15: Seg 57 687-739 5.19 329.00 0.00229 10.0% 54.71
WD16: Seg 61 743-783 7.73 434.13 8.8e-05 30.0% 55.67
WD17: Seg 65 787-825 9.19 494.10 1.4e-05 30.0% 55.23
Multiple sequence alignment of 17 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-56 ----------------------------------VESKE-S--VSHVQLA-----------C-SM---------------QDCAFPLDGTELCIWN
WD 2 61-100 -S----HQ-------L-------------L--ILRGHHQ-P--ITAMAFG---------NKV-NP---------------LLICSASLDYVI-MWN
WD 3 110-150 QG----LV-------P-------------RGTVMGSLLG-K--VLCLQLS-----------L-DD---------------HVVAVCA-GNKIFMLD
WD 4 154-193 -Q----AV-------R-------------A--ELQGHLG-P--VTAVEFC-----------PWRA---------------GTLISASEDRGFKVWD
WD 5 197-236 -G----SL-------I-------------Y--SSSVLSAYP--LLSLFID-----------A-ES---------------RQLVTGCADGQLWIFS
WD 6 240-289 -G----HH-------Y-------------R--RVARVDL-R--KKTETFSTRRVKSGLCSQP-EE---------------SQLPSTSALGKGEQVE
WD 7 298-333 -------A-------P-------------C--DLSLIPN-S--ACGC-LS-----------S-EN---------------TRCVWIGSSVGLFVFN
WD 8 337-375 -L----EV-------E-------------A--ALYYKDF-Q--SLSILLA-----------G-SC---------------ALRNRTADQKVLCLLA
WD 9 378-432 FG----GK-------I-------------A--VLEINPA-A--LVRAQQC-----------P-SMGQSLSVPASSCVLPTSPLYLGIAKEKSTKAA
WD10 453-488 ---------------K-------------V--RSSGYAS-A--PHVTMFS-----------P-KT---------------NIKSEGKGSSRSRSSC
WD11 489-541 AR----EA-------YPVECAVPTKPGPQV--AAAPTCT-R--VCCIQYS-----------G-DG---------------QWLACGLANHLLLVFD
WD12 545-583 -T----GT-------P-------------A--VFSGHDG-A--VNAVCWS-----------Q-DR---------------RWLLSAARDGTLRMWS
WD13 584-628 ARGAELAL-------L-------------L--GKDMFSK-P--IQSAQFY-----------YIDA---------------FILLSSGPEFQLLRYH
WD14 640-686 KQ----KSKSKLICRL-------------S--TTGAVDM-T--SLSAVND-----------F-YS---------------HIVLAAGRNRTVEVFD
WD15 687-739 LN-AGCSA-------A-------------V--IAEAHSR-P--VHQICQN-----------K-GS-----SFTTQQPQAYNLFLTTAIGDGMRLWD
WD16 743-783 -L----RC-------E-------------R--HFEGHPT-RGYPCGIAFS-----------P-CG---------------RFAACGAEDRHAYVYE
WD17 787-825 -S----TF-------S-------------H--RLAGHTD-T--VTGVAFN-----------P-SA---------------PQLATATLDGKLQLFL
WD40 Template TG----EC-------L-------------R--TLSGHTS-G--VTSVSFS-----------P-DG---------------KRLVSGSEDGTIKVWD