WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000384518    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000384518 (Len=187)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000384518, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 80  
WD40-rpts      (___________________WD 1___________________)           (_________________WD 2___

Query       81 VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 160 
WD40-rpts      ______________)  (__________________WD 3__________________)        (____________

Query      161 VWQVRHLPQNRELFLTAGGAGGLHLWK 187 
WD40-rpts      _____WD 4_________________)



4 WD40-repeats found in QUERY=ENSP00000384518 (Len=187):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       8.08  448.37  5.6e-05       30.0%     47.20
  WD 2:  Seg  6    56-95       6.48  382.32  0.00044       12.5%     21.35
  WD 3:  Seg  9    98-139      6.44  380.79  0.00046       30.0%     54.91
  WD 4:  Seg 13   148-187      6.43  380.20  0.00047       20.0%     49.64
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-44     --MPVYSVKGHKEIINAIDGIGGLGIGE-G---APEIVTGSRDGTVKVWD
   WD 2   56-95     EPVQGENKRDCWTVAFGN------AYNQ-E---ERVVCAGYDNGDIKLFD
   WD 3   98-139    -NMALRWETNIKNGVCSL------EFDR-KDISMNKLVATSLEGKFHVFD
   WD 4  148-187    -GFASVSEKAHKSTVWQV------RHLPQN---RELFLTAGGAGGLHLWK

   WD40 Template    TGECLRTLSGHTSGVTSV------SFSP-D---GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019