Input parameters:
Query = ENSP00000384518 (Len=187)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000384518, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 80
WD40-rpts (___________________WD 1___________________) (_________________WD 2___
Query 81 VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 160
WD40-rpts ______________) (__________________WD 3__________________) (____________
Query 161 VWQVRHLPQNRELFLTAGGAGGLHLWK 187
WD40-rpts _____WD 4_________________)
4 WD40-repeats found in QUERY=ENSP00000384518 (Len=187):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-44 8.08 448.37 5.6e-05 30.0% 47.20
WD 2: Seg 6 56-95 6.48 382.32 0.00044 12.5% 21.35
WD 3: Seg 9 98-139 6.44 380.79 0.00046 30.0% 54.91
WD 4: Seg 13 148-187 6.43 380.20 0.00047 20.0% 49.64
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-44 --MPVYSVKGHKEIINAIDGIGGLGIGE-G---APEIVTGSRDGTVKVWD
WD 2 56-95 EPVQGENKRDCWTVAFGN------AYNQ-E---ERVVCAGYDNGDIKLFD
WD 3 98-139 -NMALRWETNIKNGVCSL------EFDR-KDISMNKLVATSLEGKFHVFD
WD 4 148-187 -GFASVSEKAHKSTVWQV------RHLPQN---RELFLTAGGAGGLHLWK
WD40 Template TGECLRTLSGHTSGVTSV------SFSP-D---GKRLVSGSEDGTIKVWD