Input parameters:
Query = ENSP00000384792 (Len=1523)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000384792, Len=1523):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAVGSGGYARNDAGEKLPSVMAGVPARRGQSSPPPAPPICLRRRTRLSTASEETVQNRVSLEKVLGITAQNSSGLTCDP 80
WD40-rpts (________________WD 1________________)
Query 81 GTGHVAYLAGCVVVILDPKENKQQHIFNTARKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKNQVAEMLGHKYGVAC 160
WD40-rpts (__________________WD 2_________________) (_______________
Query 161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEVSTETKVTSTVPL 240
WD40-rpts ___WD 3_________________) (________________WD 4________________) (____
Query 241 VGRSGILGELHNNIFCGVACGRGRMAGSTFCVSYSGLLCQFNEKRVLEKWINLKVSLSSCLCVSQELIFCGCTDGIVRIF 320
WD40-rpts ________________WD 5___________________) (_________________WD 6_________________
Query 321 QAHSLHYLANLPKPHYLGVDVAQGLEPSFLFHRKAEAVYPDTVALTFDPIHQWLSCVYKDHSIYIWDVKDINRVGKVWSE 400
WD40-rpts ) (_______________WD 7______________)(____________
Query 401 LFHSSYVWNVEVYPEFEDQRACLPSGSFLTCSSDNTIRFWNLDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSHFPD 480
WD40-rpts ____________WD 8________________________)
Query 481 RGSENGTPMDVKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELVKVEAHDAEVLCLEYSKPETGLTLLASASRDRL 560
WD40-rpts (_________________WD 9________________) (__________________WD10______________
Query 561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGNRDIQMISCGADKSIYFRSAQQGSDGLHFVRTHHVAEKTTLYDMDIDITQ 640
WD40-rpts ____) (_________________WD11________________)(_____________________WD12_____
Query 641 KYVAVACQDRNVRVYNTVNGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITS 720
WD40-rpts _______________) (_________________WD13________________) (_______________
Query 721 MKFTYDCHHLITVSGDSCVFIWHLGPEITNCMKQHLLEIDHRQQQQHTNDKKRSGHPRQDTYVSTPSEIHSLSPGEQTED 800
WD40-rpts __WD14________________) (___________________WD15___________________)
Query 801 DLEEECEPEEMLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADGLAFHAKRSYQPHGRWAERAGQEPLKTILDAQ 880
WD40-rpts (__________________WD16_________________)
Query 881 DLDCYFTPMKPESLENSILDSLEPQSLASLLSESESPQEAGRGHPSFLPQQKESSEASELILYSLEAEVTVTGTDSQYCR 960
WD40-rpts (_________________WD17________________)
Query 961 KEVEAGPGDQQGDSYLRVSSDSPKDQSPPEDSGESEADLECSFAAIHSPAPPPDPAPRFATSLPHFPGCAGPTEDELSLP 1040
WD40-rpts
Query 1041 EGPSVPSSSLPQTPEQEKFLRHHFETLTESPCRELFPAALGDVEASEAEDHFFNPRLSISTQFLSSLQKASRFTHTFPPR 1120
WD40-rpts
Query 1121 ATQCLVKSPEVKLMDRGGSQPRAGTGYASPDRTHVLAAGKAEETLEAWRPPPPCLTSLASCVPASSVLPTDRNLPTPTSA 1200
WD40-rpts
Query 1201 PTPGLAQGVHAPSTCSYMEATASSRARISRSISLGDSEGPIVATLAQPLRRPSSVGELASLGQELQAITTATTPSLDSEG 1280
WD40-rpts
Query 1281 QEPALRSWGNHEARANLRLTLSSACDGLLQPPVDTQPGVTVPAVSFPAPSPVEESALRLHGSAFRPSLPAPESPGLPAHP 1360
WD40-rpts
Query 1361 SNPQLPEARPGIPGGTASLLEPTSGALGLLQGSPARWSEPWVPVEALPPSPLELSRVGNILHRLQTTFQEALDLYRVLVS 1440
WD40-rpts
Query 1441 SGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPSPPTLYPLASPDLQALLEHYSELLVQAVRRKA 1520
WD40-rpts
Query 1521 RGH 1523
WD40-rpts
17 WD40-repeats found in QUERY=ENSP00000384792 (Len=1523):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 24-61 3.92 276.42 0.01167 15.0% 32.79
WD 2: Seg 10 101-141 6.62 388.03 0.00037 25.0% 56.25
WD 3: Seg 14 145-185 7.72 433.69 8.9e-05 37.5% 55.96
WD 4: Seg 18 188-225 5.12 326.28 0.00249 17.5% 53.83
WD 5: Seg 23 236-280 3.59 262.98 0.01765 12.5% 41.68
WD 6: Seg 26 282-321 5.57 344.94 0.00140 10.0% 50.22
WD 7: Seg 32 353-387 5.84 355.84 0.00100 20.0% 47.10
WD 8: Seg 35 388-441 5.39 337.46 0.00176 25.0% 53.14
WD 9: Seg 42 482-520 7.79 436.39 8.2e-05 30.0% 46.66
WD10: Seg 45 524-565 6.38 378.36 0.00050 25.0% 55.55
WD11: Seg 49 571-609 6.41 379.37 0.00048 22.5% 48.20
WD12: Seg 52 610-656 5.06 323.62 0.00271 10.0% 48.93
WD13: Seg 56 663-701 7.25 414.31 0.00016 25.0% 52.07
WD14: Seg 60 705-743 9.15 492.69 1.4e-05 32.5% 57.69
WD15: Seg 64 753-796 5.11 325.71 0.00254 15.0% 33.63
WD16: Seg 71 838-878 4.37 294.97 0.00658 10.0% 41.60
WD17: Seg 74 882-920 4.46 299.00 0.00580 17.5% 12.15
Multiple sequence alignment of 17 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 24-61 -GVP-----A----RRGQ-------S-----SPPPAPPICLRRRT-------------RLSTAS--E--ETVQNRVS
WD 2 101-141 -NKQ-----Q----HIFN-------T-----ARKSLSALAFSPDG---K---------YIVTGE--NGHRPAVRIWD
WD 3 145-185 -KNQ-----V----AEML-------G-----HKYGVACVAFSPNM---K---------HIVSMGYQH--DMVLNVWD
WD 4 188-225 -KDI-----V----VASN-------K-----VSCRVIALSFSEDS---S---------YFVTVG-----NRHVRFWF
WD 5 236-280 STVP-----L----VGRS-------GILGELHNNIFCGVACGRGR---M---------AGSTFC--V--SYSGLLCQ
WD 6 282-321 NEKR-----V----LEKW-------I-----NLKVSLSSCLCVSQ---E---------LIFCGC--T--DGIVRIFQ
WD 7 353-387 --------------RKAE-------A-----VYPDTVALTFDPIH---Q---------WLSCVY--K--DHSIYIWD
WD 8 388-441 VKDINRVGKV----WSEL-------F-----HSSYVWNVEVYPEF---EDQRACLPSGSFLTCS--S--DNTIRFWN
WD 9 482-520 -GSE-----N----GTPM-------D-----VKAGVRVMQVSPDG---Q---------HLASGD--R--SGNLRIHE
WD10 524-565 -MDE-----L----VKVE-------A-----HDAEVLCLEYSKPETGLT---------LLASAS--R--DRLIHVLN
WD11 571-609 --NL-----E----QTLD-------D-----HSSSITAIKFAGNR---D--------IQMISCG--A--DKSIYFRS
WD12 610-656 AQQG-----S----DGLHFVRTHHVA-----EKTTLYDMDIDITQ---K---------YVAVAC--Q--DRNVRVYN
WD13 663-701 -KKC-----Y----KGSQ-------G-----DEGSLLKVHVDPSG---T---------FLATSC--S--DKSISVID
WD14 705-743 -GEC-----I----AKMF-------G-----HSEIITSMKFTYDC---H---------HLITVS--G--DSCVFIWH
WD15 753-796 KQHL-----LEIDHRQQQ-------Q-----HTNDKKRSGHPRQD---T---------YVSTPS--E--IHSLSPGE
WD16 838-878 KRLL----GD----DDVA-------D-----GLAFHAKRSYQPHG---R---------WAERAG--Q--EPLKTILD
WD17 882-920 -LDC-----Y----FTPM-------K-----PESLENSILDSLEP---Q---------SLASLL--S--ESESPQEA
WD40 Template TGEC-----L----RTLS-------G-----HTSGVTSVSFSPDG---K---------RLVSGS--E--DGTIKVWD