WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000384792    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000384792 (Len=1523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000384792, Len=1523):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVGSGGYARNDAGEKLPSVMAGVPARRGQSSPPPAPPICLRRRTRLSTASEETVQNRVSLEKVLGITAQNSSGLTCDP 80  
WD40-rpts                             (________________WD 1________________)                   

Query       81 GTGHVAYLAGCVVVILDPKENKQQHIFNTARKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKNQVAEMLGHKYGVAC 160 
WD40-rpts                          (__________________WD 2_________________)   (_______________

Query      161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEVSTETKVTSTVPL 240 
WD40-rpts      ___WD 3_________________)  (________________WD 4________________)          (____

Query      241 VGRSGILGELHNNIFCGVACGRGRMAGSTFCVSYSGLLCQFNEKRVLEKWINLKVSLSSCLCVSQELIFCGCTDGIVRIF 320 
WD40-rpts      ________________WD 5___________________) (_________________WD 6_________________

Query      321 QAHSLHYLANLPKPHYLGVDVAQGLEPSFLFHRKAEAVYPDTVALTFDPIHQWLSCVYKDHSIYIWDVKDINRVGKVWSE 400 
WD40-rpts      )                               (_______________WD 7______________)(____________

Query      401 LFHSSYVWNVEVYPEFEDQRACLPSGSFLTCSSDNTIRFWNLDSSPDSHWQKNIFSNTLLKVVYVENDIQHLQDMSHFPD 480 
WD40-rpts      ____________WD 8________________________)                                       

Query      481 RGSENGTPMDVKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELVKVEAHDAEVLCLEYSKPETGLTLLASASRDRL 560 
WD40-rpts       (_________________WD 9________________)   (__________________WD10______________

Query      561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGNRDIQMISCGADKSIYFRSAQQGSDGLHFVRTHHVAEKTTLYDMDIDITQ 640 
WD40-rpts      ____)     (_________________WD11________________)(_____________________WD12_____

Query      641 KYVAVACQDRNVRVYNTVNGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITS 720 
WD40-rpts      _______________)      (_________________WD13________________)   (_______________

Query      721 MKFTYDCHHLITVSGDSCVFIWHLGPEITNCMKQHLLEIDHRQQQQHTNDKKRSGHPRQDTYVSTPSEIHSLSPGEQTED 800 
WD40-rpts      __WD14________________)         (___________________WD15___________________)    

Query      801 DLEEECEPEEMLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADGLAFHAKRSYQPHGRWAERAGQEPLKTILDAQ 880 
WD40-rpts                                           (__________________WD16_________________)  

Query      881 DLDCYFTPMKPESLENSILDSLEPQSLASLLSESESPQEAGRGHPSFLPQQKESSEASELILYSLEAEVTVTGTDSQYCR 960 
WD40-rpts       (_________________WD17________________)                                        

Query      961 KEVEAGPGDQQGDSYLRVSSDSPKDQSPPEDSGESEADLECSFAAIHSPAPPPDPAPRFATSLPHFPGCAGPTEDELSLP 1040
WD40-rpts                                                                                      

Query     1041 EGPSVPSSSLPQTPEQEKFLRHHFETLTESPCRELFPAALGDVEASEAEDHFFNPRLSISTQFLSSLQKASRFTHTFPPR 1120
WD40-rpts                                                                                      

Query     1121 ATQCLVKSPEVKLMDRGGSQPRAGTGYASPDRTHVLAAGKAEETLEAWRPPPPCLTSLASCVPASSVLPTDRNLPTPTSA 1200
WD40-rpts                                                                                      

Query     1201 PTPGLAQGVHAPSTCSYMEATASSRARISRSISLGDSEGPIVATLAQPLRRPSSVGELASLGQELQAITTATTPSLDSEG 1280
WD40-rpts                                                                                      

Query     1281 QEPALRSWGNHEARANLRLTLSSACDGLLQPPVDTQPGVTVPAVSFPAPSPVEESALRLHGSAFRPSLPAPESPGLPAHP 1360
WD40-rpts                                                                                      

Query     1361 SNPQLPEARPGIPGGTASLLEPTSGALGLLQGSPARWSEPWVPVEALPPSPLELSRVGNILHRLQTTFQEALDLYRVLVS 1440
WD40-rpts                                                                                      

Query     1441 SGQVDTGQQQARTELVSTFLWIHSQLEAECLVGTSVAPAQALPSPGPPSPPTLYPLASPDLQALLEHYSELLVQAVRRKA 1520
WD40-rpts                                                                                      

Query     1521 RGH 1523
WD40-rpts         



17 WD40-repeats found in QUERY=ENSP00000384792 (Len=1523):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    24-61       3.92  276.42  0.01167       15.0%     32.79
  WD 2:  Seg 10   101-141      6.62  388.03  0.00037       25.0%     56.25
  WD 3:  Seg 14   145-185      7.72  433.69  8.9e-05       37.5%     55.96
  WD 4:  Seg 18   188-225      5.12  326.28  0.00249       17.5%     53.83
  WD 5:  Seg 23   236-280      3.59  262.98  0.01765       12.5%     41.68
  WD 6:  Seg 26   282-321      5.57  344.94  0.00140       10.0%     50.22
  WD 7:  Seg 32   353-387      5.84  355.84  0.00100       20.0%     47.10
  WD 8:  Seg 35   388-441      5.39  337.46  0.00176       25.0%     53.14
  WD 9:  Seg 42   482-520      7.79  436.39  8.2e-05       30.0%     46.66
  WD10:  Seg 45   524-565      6.38  378.36  0.00050       25.0%     55.55
  WD11:  Seg 49   571-609      6.41  379.37  0.00048       22.5%     48.20
  WD12:  Seg 52   610-656      5.06  323.62  0.00271       10.0%     48.93
  WD13:  Seg 56   663-701      7.25  414.31  0.00016       25.0%     52.07
  WD14:  Seg 60   705-743      9.15  492.69  1.4e-05       32.5%     57.69
  WD15:  Seg 64   753-796      5.11  325.71  0.00254       15.0%     33.63
  WD16:  Seg 71   838-878      4.37  294.97  0.00658       10.0%     41.60
  WD17:  Seg 74   882-920      4.46  299.00  0.00580       17.5%     12.15
Multiple sequence alignment of 17 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   24-61     -GVP-----A----RRGQ-------S-----SPPPAPPICLRRRT-------------RLSTAS--E--ETVQNRVS
   WD 2  101-141    -NKQ-----Q----HIFN-------T-----ARKSLSALAFSPDG---K---------YIVTGE--NGHRPAVRIWD
   WD 3  145-185    -KNQ-----V----AEML-------G-----HKYGVACVAFSPNM---K---------HIVSMGYQH--DMVLNVWD
   WD 4  188-225    -KDI-----V----VASN-------K-----VSCRVIALSFSEDS---S---------YFVTVG-----NRHVRFWF
   WD 5  236-280    STVP-----L----VGRS-------GILGELHNNIFCGVACGRGR---M---------AGSTFC--V--SYSGLLCQ
   WD 6  282-321    NEKR-----V----LEKW-------I-----NLKVSLSSCLCVSQ---E---------LIFCGC--T--DGIVRIFQ
   WD 7  353-387    --------------RKAE-------A-----VYPDTVALTFDPIH---Q---------WLSCVY--K--DHSIYIWD
   WD 8  388-441    VKDINRVGKV----WSEL-------F-----HSSYVWNVEVYPEF---EDQRACLPSGSFLTCS--S--DNTIRFWN
   WD 9  482-520    -GSE-----N----GTPM-------D-----VKAGVRVMQVSPDG---Q---------HLASGD--R--SGNLRIHE
   WD10  524-565    -MDE-----L----VKVE-------A-----HDAEVLCLEYSKPETGLT---------LLASAS--R--DRLIHVLN
   WD11  571-609    --NL-----E----QTLD-------D-----HSSSITAIKFAGNR---D--------IQMISCG--A--DKSIYFRS
   WD12  610-656    AQQG-----S----DGLHFVRTHHVA-----EKTTLYDMDIDITQ---K---------YVAVAC--Q--DRNVRVYN
   WD13  663-701    -KKC-----Y----KGSQ-------G-----DEGSLLKVHVDPSG---T---------FLATSC--S--DKSISVID
   WD14  705-743    -GEC-----I----AKMF-------G-----HSEIITSMKFTYDC---H---------HLITVS--G--DSCVFIWH
   WD15  753-796    KQHL-----LEIDHRQQQ-------Q-----HTNDKKRSGHPRQD---T---------YVSTPS--E--IHSLSPGE
   WD16  838-878    KRLL----GD----DDVA-------D-----GLAFHAKRSYQPHG---R---------WAERAG--Q--EPLKTILD
   WD17  882-920    -LDC-----Y----FTPM-------K-----PESLENSILDSLEP---Q---------SLASLL--S--ESESPQEA

   WD40 Template    TGEC-----L----RTLS-------G-----HTSGVTSVSFSPDG---K---------RLVSGS--E--DGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019