Input parameters:
Query = ENSP00000388650 (Len=1196)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000388650, Len=1196):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPTAESEAKVKTKVRFEELLKTHSDLMREKKKLKKKLVRSEENISPDTIRSNLHYMKETTSDDPDTIRSNLPHIKETTSD 80
WD40-rpts
Query 81 DVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEEDKQGKPNKKVIKTVPQLTTQDLKPETPENKVDSTHQKTHTK 160
WD40-rpts
Query 161 PQPGVDHQKSEKANEGREETDLEEDEELMQAYQCHVTEEMAKEIKRKIRKKLKEQLTYFPSDTLFHDDKLSSEKRKKKKE 240
WD40-rpts
Query 241 VPVFSKAETSTLTISGDTVEGEQKKESSVRSVSSDSHQDDEISSMEQSTEDSMQDDTKPKPKKTKKKTKAVADNNEDVDG 320
WD40-rpts
Query 321 DGVHEITSRDSPVYPKCLLDDDLVLGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSGRPVSSYYEKENVDYI 400
WD40-rpts
Query 401 LPIMTQPYDFKQLKSRLPEWEEQIVFNENFPYLLRGSDESPKVILFFEILDFLSVDEIKNNSEVQNQECGFRKIAWAFLK 480
WD40-rpts
Query 481 LLGANGNANINSKLRLQLYYPPTKPRSPLSVVEAFEWWSKCPRNHYPSTLYVTVRGLKVPDCIKPSYRSMMALQEEKGKP 560
WD40-rpts (________________WD 1________________)(_______________WD 2_______________)
Query 561 VHCERHHESSSVDTEPGLEESKEVIKWKRLPGQACRIPNKHLFSLNAGERGCFCLDFSHNGRILAAACASRDGYPIILYE 640
WD40-rpts (__________________WD 3__________________)
Query 641 IPSGRFMRELCGHLNIIYDLSWSKDDHYILTSSSDGTARIWKNEINNTNTFRVLPHPSFVYTAKFHPAVRELVVTGCYDS 720
WD40-rpts (_________________WD 4________________) (_________________WD 5____________
Query 721 MIRIWKVEMREDSAILVRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTYVKINDLEHSVHHWTINKEIKETEFKG 800
WD40-rpts _____) (_________________WD 6________________) (__________
Query 801 IPISYLEIHPNGKRLLIHTKDSTLRIMDLRILVARKFVGAANYREKIHSTLTPCGTFLFAGSEDGIVYVWNPETGEQVAM 880
WD40-rpts _______WD 7________________) (__________________WD 8_________________) (_____
Query 881 YSDLPFKSPIRDISYHPFENMVAFCAFGQNEPILLYIYDFHVAQQEAEMFKRYNGTFPLPGIHQSQDALCTCPKLPHQGS 960
WD40-rpts _______________WD 9___________________) (_________________WD10_______
Query 961 FQIDEFVHTESSSTKMQLVKQRLETVTEVIRSCAAKVNKNLSFTSPPAVSSQQSKLKQSNMLTAQEILHQFGFTQTGIIS 1040
WD40-rpts __________)(_____________________WD11____________________) (_______________
Query 1041 IERKPCNHQVDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQELPPEIK 1120
WD40-rpts _WD12_______________) (_________________WD13________________)
Query 1121 ERSPPLSPEEKTKIEKSPAPQKQSINKNKSQDFRLGSESMTHSEMRKEQSHEDQGHIMDTRMRKNKQAGRKVTLIE 1196
WD40-rpts
13 WD40-repeats found in QUERY=ENSP00000388650 (Len=1196):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 482-519 3.09 242.31 0.03327 15.0% 6.86
WD 2: Seg 13 520-555 3.56 261.88 0.01826 7.5% 34.96
WD 3: Seg 19 599-640 5.77 352.90 0.00109 20.0% 50.78
WD 4: Seg 23 644-682 9.50 507.15 9.1e-06 32.5% 54.48
WD 5: Seg 27 687-726 6.92 400.46 0.00025 25.0% 56.81
WD 6: Seg 31 734-772 8.23 454.50 4.7e-05 30.0% 52.52
WD 7: Seg 35 790-828 7.48 423.75 0.00012 20.0% 53.38
WD 8: Seg 39 831-871 6.98 403.19 0.00023 30.0% 54.90
WD 9: Seg 43 875-919 4.45 298.67 0.00586 17.5% 56.42
WD10: Seg 47 932-971 7.68 431.92 9.4e-05 12.5% 38.11
WD11: Seg 50 972-1018 4.91 317.31 0.00329 10.0% 40.22
WD12: Seg 54 1025-1061 3.99 279.53 0.01060 15.0% 40.46
WD13: Seg 58 1064-1102 5.47 340.46 0.00161 12.5% 42.19
Multiple sequence alignment of 13 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 482-519 LG------ANGNA--NINSKLRLQ--LYYP-PTK-PRSP---LSVVE---A----FEWWS
WD 2 520-555 ---------KCPR--NHYPSTLYV--TVRGLKVP-DCIK---PSYRS---M----MALQE
WD 3 599-640 -NK----HLFSLN--AGERGCFCL--DFSH-NGR-ILAA---ACASRDGYP----IILYE
WD 4 644-682 -GR----FMRELC--GHLNIIYDL--SWSK-DDH-YILT---SSSDG---T----ARIWK
WD 5 687-726 -NT----NTFRVL--PHPSFVYTA--KFHP-AVRELVVT---GCYDS---M----IRIWK
WD 6 734-772 -AI----LVRQFD--VHKSFINSL--CFDT-EGH-HMYS---GDCTG---V----IVVWN
WD 7 790-828 -NK----EIKETE--FKGIPISYL--EIHP-NGK-RLLI---HTKDS---T----LRIMD
WD 8 831-871 -IL----VARKFV--GAANYREKIHSTLTP-CGT-FLFA---GSEDG---I----VYVWN
WD 9 875-919 -GE----QVAMYSDLPFKSPIRDI--SYHP-FEN-MVAF---CAFGQ---NEPILLYIYD
WD10 932-971 RYN----GTFPLP--GIHQSQDAL--CTCP-KLP-HQGS---FQIDE---F----VHTES
WD11 972-1018 SSTKMQLVKQRLE--TVTEVIRSC--AAKV-NKN-LSFTSPPAVSSQ---Q----SKLKQ
WD12 1025-1061 -QE----ILHQFG--FTQTGIISI--ERKP-CNH-QVDT---AP--T---V----VALYD
WD13 1064-1102 -AN----RSDELT--IHRGDIIRV--FFKD-NED-WWYG---SIGKG---Q----EGYFP
WD40 Template TGE----CLRTLS--GHTSGVTSV--SFSP-DGK-RLVS---GSEDG---T----IKVWD