WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000390077    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000390077 (Len=232)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000390077, Len=232):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAV 232 
WD40-rpts      _________)   (_________________WD 4________________)                    



4 WD40-repeats found in QUERY=ENSP00000390077 (Len=232):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83       9.65  513.13  7.5e-06       35.0%     51.87
  WD 2:  Seg  7    87-125      8.89  481.84  2.0e-05       15.0%     52.58
  WD 3:  Seg 11   133-170      7.65  430.55  9.8e-05       30.0%     48.08
  WD 4:  Seg 15   174-212     10.53  549.47  2.4e-06       42.5%     55.51
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   45-83     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2   87-125    TNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 3  133-170    VRVSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD
   WD 4  174-212    GQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019