Input parameters:
Query = ENSP00000390077 (Len=232)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000390077, Len=232):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80
WD40-rpts (_________________WD 1______________
Query 81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITS 160
WD40-rpts __) (_________________WD 2________________) (________________WD 3_______
Query 161 SGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAV 232
WD40-rpts _________) (_________________WD 4________________)
4 WD40-repeats found in QUERY=ENSP00000390077 (Len=232):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 45-83 9.65 513.13 7.5e-06 35.0% 51.87
WD 2: Seg 7 87-125 8.89 481.84 2.0e-05 15.0% 52.58
WD 3: Seg 11 133-170 7.65 430.55 9.8e-05 30.0% 48.08
WD 4: Seg 15 174-212 10.53 549.47 2.4e-06 42.5% 55.51
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 45-83 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
WD 2 87-125 TNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
WD 3 133-170 VRVSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD
WD 4 174-212 GQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD