WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000391461 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000391461 (Len=1429) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000391461, Len=1429): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDSQFHMAGEASQSWLKAKEKQRGTSYMVAVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDRLADGC 80
WD40-rpts
Query 81 LDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTRLRELDTAGQELAWLY 160
WD40-rpts
Query 161 QEIRHHLWQSSEVIQTFCGRQELLARLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGT 240
WD40-rpts
Query 241 SQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLP 320
WD40-rpts
Query 321 LNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGR 400
WD40-rpts
Query 401 LRLAFEEARKWASFTVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRD 480
WD40-rpts
Query 481 WTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKK 560
WD40-rpts
Query 561 LITLPLVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLC 640
WD40-rpts
Query 641 APHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQP 720
WD40-rpts
Query 721 PGGPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHTGEVRCVKIFAKGTLANSASKDYTLH 800
WD40-rpts (_________________WD 1________________) (_________________WD 2______________
Query 801 LWNLLSGQEKFTIWDGGSKNPAEPQIWNLHVDEAHKVVYSASGSKINAWNLETAEPVFHILGDASDPWMCMAVLASQATL 880
WD40-rpts __) (________________WD 3_______________) (_________________WD 4_____
Query 881 LTVSRDGVVSLWSSATGKLQGKQHMSSIKEETPTCAVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSED 960
WD40-rpts ____________) (________________WD 5________________)(________________WD 6_
Query 961 ESLLAAGFGRSVRIFLADSRGFRRFMAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVS 1040
WD40-rpts _______________) (_________________WD 7________________) (______________
Query 1041 LLARGGALVASASPQSSSFKVWDLSDAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTS 1120
WD40-rpts __WD 8________________) (__________________WD 9_________________) (_________
Query 1121 SEIRCLEVAEQRKLLFTGLVSGVVLVFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSGDPCPV 1200
WD40-rpts _______WD10________________)(___________________WD11__________________) (_____
Query 1201 IDGPRYTFYTQLPETLSSVAILTDYRVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKEQLVVSGSEDALLCLW 1280
WD40-rpts _______________WD12____________________) (_________________WD13________________
Query 1281 DLQARKWKFEMSYTSSYCRGVQCACFSKDDKYVYVGLKDRSILVWSVLDGTLLTVQFVHAVVNRIIPTTSGFIAPTRHGY 1360
WD40-rpts ) (_________________WD14________________) (________________WD15__________
Query 1361 LIRENFQCLSAKASPQDPLKNFKKAMWMVKSRQREELVAAAGAPQDLESESAQGNETKSNKCSQVCLIV 1429
WD40-rpts _____) (_________________WD16________________)
 16 WD40-repeats found in QUERY=ENSP00000391461 (Len=1429): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 723-761 8.53 467.13 3.1e-05 40.0% 55.96 WD 2: Seg 14 765-803 8.61 470.37 2.8e-05 30.0% 58.11 WD 3: Seg 19 814-850 4.80 313.05 0.00376 12.5% 34.20 WD 4: Seg 22 854-893 6.44 380.56 0.00046 20.0% 57.72 WD 5: Seg 26 901-938 5.85 356.15 0.00099 25.0% 47.13 WD 6: Seg 30 939-976 5.57 344.89 0.00140 17.5% 45.47 WD 7: Seg 33 983-1021 7.68 431.89 9.4e-05 22.5% 51.48 WD 8: Seg 37 1026-1063 5.68 349.34 0.00122 22.5% 50.35 WD 9: Seg 41 1067-1107 5.97 361.39 0.00084 12.5% 46.37 WD10: Seg 44 1111-1148 6.22 371.69 0.00061 22.5% 52.96 WD11: Seg 48 1149-1191 4.53 301.99 0.00529 17.5% 48.39 WD12: Seg 52 1195-1240 4.78 312.06 0.00387 17.5% 46.52 WD13: Seg 55 1243-1281 8.20 453.34 4.8e-05 35.0% 55.21 WD14: Seg 59 1288-1326 7.77 435.76 8.3e-05 30.0% 50.17 WD15: Seg 63 1330-1366 3.36 253.41 0.02369 15.0% 50.58 WD16: Seg 67 1373-1411 6.19 370.30 0.00064 5.0% 28.72Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 723-761 -GP----LRATLSGCH--------KG-ITAMAWGVEEK--LLVIGTQDGIMAVWD WD 2 765-803 -QH----VIHMLTGHT--------GE-VRCVKIFAKGT--LANSASKDYTLHLWN WD 3 814-850 --W----DGGSKNPAE--------PQ-IWNLHVDEAHK--VVYSAS-GSKINAWN WD 4 854-893 -AE----PVFHILGDA--------SDPWMCMAVLASQA--TLLTVSRDGVVSLWS WD 5 901-938 -GK----QHMSSIKEE--------TP-TCAVSVQKQGK---LVTGFSNGSISLVS WD 6 939-976 -SK----GDRLLEKLP--------DA-VRFLVVSEDES--LLAAGF-GRSVRIFL WD 7 983-1021 -RR----FMAMDLEHE--------DM-VETAVFGTENN--LIITGSLDALIQVWS WD 8 1026-1063 -GT----LLDILEGVG--------AP-VSLLARGGAL---VASASPQSSSFKVWD WD 9 1067-1107 -AH----RSRVPAPFL--------DR-TGLTAVSHNGSYVYFPKIGDKNKVTIWD WD10 1111-1148 -GE----EQDSLDTS---------SE-IRCLEVAEQRK--LLFTGLVSGVVLVFP WD11 1149-1191 LNSRQDVICIPPPEAR--------KA-INCMSLSKCED--RLAIAY-DNIVLVLD WD12 1195-1240 -GD----PCPVIDGPRYTFYTQLPET-LSSVAILTDYR--VVYSMT-NGDLFLYE WD13 1243-1281 -TS----KAFPLETHR--------SR-VACVEVSHKEQ--LVVSGSEDALLCLWD WD14 1288-1326 -KF----EMSYTSSYC--------RG-VQCACFSKDDK--YVYVGLKDRSILVWS WD15 1330-1366 -GT----LLTVQFVH---------AV-VNRIIPTTSGF---IAPTRHGYLIRENF WD16 1373-1411 -AS----PQDPLKNFK--------KA-MWMVKSRQREE--LVAAAGAPQDLESES WD40 Template TGE----CLRTLSGHT--------SG-VTSVSFSPDGK--RLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |