WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000393099 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000393099 (Len=1514) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000393099, Len=1514): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKH 80
WD40-rpts (________________WD 1_______________)________________WD 2__________________) (
Query 81 KQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIV 160
WD40-rpts __________________WD 3_________________) (__________________WD 4______________
Query 161 NVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACG 240
WD40-rpts ___)(_________________WD 5_________________)
Query 241 RGKKADSTFCITSSGLLCEFSDRRLLDKWVELRNIDSFTTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPH 320
WD40-rpts (____________________WD 6____________________)
Query 321 ALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPE 400
WD40-rpts (___________________WD 7___________________)(_________________________WD
Query 401 VKDSNQACLPPSSFITCSSDNTIRLWNTESSGVHGSTLHRNILSSDLIKIIYVDGNTQALLDTELPGGDKADASLLDPRV 480
WD40-rpts 8________________________)(_______________WD 9_______________) (___________
Query 481 GIRSVCVSPNGQHLASGDRMGTLRVHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQ 560
WD40-rpts ______WD10________________) (__________________WD11__________________) (__
Query 561 QTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNI 640
WD40-rpts _______________WD12_________________) (___________________WD13_______________
Query 641 RIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLIS 720
WD40-rpts ___)(____________________WD14___________________) (_________________WD15______
Query 721 VSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGGKQQGPSSPQRASGPNRHQAPSMLSPGPALSSDSDKEGEDEGTEEEL 800
WD40-rpts __________)
Query 801 PALPVLAKSTKKALASVPSPALPRSLSHWEMSRAQESVGFLDPAPAANPGPRRRGRWVQPGVELSVRSMLDLRQLETLAP 880
WD40-rpts
Query 881 SLQDPSQDSLAIIPSGPRKHGQEALETSLTSQNEKPPRPQASQPCSYPHIIRLLSQEEGVFAQDLEPAPIEDGIVYPEPS 960
WD40-rpts
Query 961 DNPTMDTSEFQVQAPARGTLGRVYPGSRSSEKHSPDSACSVDYSSSCLSSPEHPTEDSESTEPLSVDGISSDLEEPAEGD 1040
WD40-rpts
Query 1041 EEEEEEEGGMGPYGLQEGSPQTPDQEQFLKQHFETLASGAAPGAPVQVPERSESRSISSRFLLQVQTRPLREPSPSSSSL 1120
WD40-rpts
Query 1121 ALMSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPDSSWAPKRVATASPFSGLQKAQSVH 1200
WD40-rpts
Query 1201 SLVPQERHEASLQAPSPGALLSREIEAQDGLGSLPPADGRPSRPHSYQNPTTSSMAKISRSISVGENLGLVAEPQAHAPI 1280
WD40-rpts
Query 1281 RVSPLSKLALPSRAHLVLDIPKPLPDRPTLAAFSPVTKGRAPGEAEKPGFPVGLGKAHSTTERWACLGEGTTPKPRTECQ 1360
WD40-rpts
Query 1361 AHPGPSSPCAQQLPVSSLFQGPENLQPPPPEKTPNPMECTKPGAALSQDSEPAVSLEQCEQLVAELRGSVRQAVRLYHSV 1440
WD40-rpts
Query 1441 AGCKMPSAEQSRIAQLLRDTFSSVRQELEAVAGAVLSSPGSSPGAVGAEQTQALLEQYSELLLRAVERRMERKL 1514
WD40-rpts
 15 WD40-repeats found in QUERY=ENSP00000393099 (Len=1514): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-37 3.70 267.65 0.01529 17.5% 28.78 WD 2: Seg 4 35-76 2.87 233.07 0.04408 10.0% 46.79 WD 3: Seg 8 80-120 6.64 388.96 0.00036 35.0% 57.69 WD 4: Seg 12 124-164 7.39 419.85 0.00014 35.0% 56.98 WD 5: Seg 16 165-204 5.20 329.33 0.00227 30.0% 54.28 WD 6: Seg 23 261-306 4.41 296.70 0.00623 22.5% 47.42 WD 7: Seg 29 329-372 6.03 363.64 0.00078 30.0% 51.07 WD 8: Seg 33 373-427 5.56 344.47 0.00142 30.0% 55.42 WD 9: Seg 37 428-463 3.08 242.08 0.03351 10.0% 31.59 WD10: Seg 39 469-507 6.92 400.53 0.00025 32.5% 50.06 WD11: Seg 43 511-552 6.46 381.35 0.00045 27.5% 55.90 WD12: Seg 47 558-597 6.17 369.62 0.00065 27.5% 48.05 WD13: Seg 50 602-644 5.05 323.42 0.00272 17.5% 55.85 WD14: Seg 54 645-689 6.42 379.78 0.00047 15.0% 53.14 WD15: Seg 58 693-731 9.32 499.51 1.2e-05 47.5% 58.45Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-37 MA-----V-------EG---STI-----------TSRIKNLLRSPSI---K----------LRRSKA--GNR--REDLSS WD 2 35-76 LS-----S-------KVTLEKVLGI----T----VSGGRGLACDPRS---G----------LVAYPA---GC--VVVLFN WD 3 80-120 -H-----K-------QH---HILNS----S----RKTITALAFSPDG---K----------YLVTGE--SGHMPAVRVWD WD 4 124-164 -H-----S-------QV---AELQE----H----KYGVACVAFSPSA---K----------YIVSVGYQHDM--IVNVWA WD 5 165-204 WK-----K------NIV---VASNK----V----SSRVTAVSFSEDC---S----------YFVTAG---NR--HIKFWY WD 6 261-306 SD-----RRLLDKWVEL---RNIDS----F----TTTV-AHCISVSQ---D----------YIFCGC--ADG--TVRLFN WD 7 329-372 VT-----E-------AS---RLFSGVANAR----YPDTIALTFDPTN---Q----------WLSCVY--NDH--SIYVWD WD 8 373-427 VR-----D--PKKVGKV---YSALY----H----SSCVWSVEVYPEV---KDSNQACLPPSSFITCS--SDN--TIRLWN WD 9 428-463 ----------------T---ESSGV----H----GSTLHRNILSSDL---I----------KIIYVD--GNT--QALLDT WD10 469-507 -D-----K-------AD---ASLLD----P----RVGIRSVCVSPNG---Q----------HLASGD--RMG--TLRVHE WD11 511-552 -L-----S-------EM---LKVEA----H----DSEILCLEYSKPDTGLK----------LLASAS--RDR--LIHVLD WD12 558-597 -------S-------LQ---QTLDE----H----SSSITAVKFAASD---G--------QVRMISCG--ADK--SIYFRT WD13 602-644 -G-----D-------GV---QFTRT----HHVVRKTTLYDMDVEPSW---K----------YTAIGC--QDR--NIRIFN WD14 645-689 ISSGKQKK-------LF---KGSQG----E----DGTLIKVQTDPSG---I----------YIATSC--SDK--NLSIFD WD15 693-731 -G-----E-------CV---ATMFG----H----SEIVTGMKFSNDC---K----------HLISVS--GDS--CIFVWR WD40 Template TG-----E-------CL---RTLSG----H----TSGVTSVSFSPDG---K----------RLVSGS--EDG--TIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |