Input parameters:
Query = ENSP00000393818 (Len=201)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000393818, Len=201):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDVDFEEEEEEEGNEEGWVLEPQEGVVGSMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGEL 80
WD40-rpts (_________________WD 1_________________) (__
Query 81 LFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWMEWHPRAPVLLAGTADGNTWMWKVPNG 160
WD40-rpts _______________WD 2________________)(_________________WD 3_________________) (_
Query 161 DCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQG 201
WD40-rpts ________________WD 4________________)
4 WD40-repeats found in QUERY=ENSP00000393818 (Len=201):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 35-74 8.03 446.35 6.0e-05 32.5% 48.97
WD 2: Seg 8 78-116 10.27 538.86 3.4e-06 37.5% 54.54
WD 3: Seg 12 117-156 8.20 453.33 4.8e-05 17.5% 50.79
WD 4: Seg 16 159-197 9.95 525.55 5.1e-06 42.5% 54.60
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 35-74 -DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWR
WD 2 78-116 -GELLFECAGHKDSVTCAGFSHDSTLV-ATGDMSGLLKVWQ
WD 3 117-156 VDTKEEVWSFEAGDLEWMEWHPRAPVL-LAGTADGNTWMWK
WD 4 159-197 -NGDCKTFQGPNCPATCGRVLPDGKRA-VVGYEDGTIRIWD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD