WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000393818    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000393818 (Len=201)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000393818, Len=201):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDVDFEEEEEEEGNEEGWVLEPQEGVVGSMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGEL 80  
WD40-rpts                                        (_________________WD 1_________________)   (__

Query       81 LFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWMEWHPRAPVLLAGTADGNTWMWKVPNG 160 
WD40-rpts      _______________WD 2________________)(_________________WD 3_________________)  (_

Query      161 DCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQG 201 
WD40-rpts      ________________WD 4________________)    



4 WD40-repeats found in QUERY=ENSP00000393818 (Len=201):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    35-74       8.03  446.35  6.0e-05       32.5%     48.97
  WD 2:  Seg  8    78-116     10.27  538.86  3.4e-06       37.5%     54.54
  WD 3:  Seg 12   117-156      8.20  453.33  4.8e-05       17.5%     50.79
  WD 4:  Seg 16   159-197      9.95  525.55  5.1e-06       42.5%     54.60
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   35-74     -DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWR
   WD 2   78-116    -GELLFECAGHKDSVTCAGFSHDSTLV-ATGDMSGLLKVWQ
   WD 3  117-156    VDTKEEVWSFEAGDLEWMEWHPRAPVL-LAGTADGNTWMWK
   WD 4  159-197    -NGDCKTFQGPNCPATCGRVLPDGKRA-VVGYEDGTIRIWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019