Input parameters:
Query = ENSP00000397547 (Len=205)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000397547, Len=205):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQ 80
WD40-rpts (_______________WD 1______________) (_______
Query 81 AHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEER 160
WD40-rpts __________WD 2________________)(__________________WD 3_________________) (____
Query 161 ILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLAT 205
WD40-rpts ______________WD 4_________________)
4 WD40-repeats found in QUERY=ENSP00000397547 (Len=205):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 35-69 7.88 440.10 7.3e-05 25.0% 41.91
WD 2: Seg 6 73-111 9.01 486.92 1.7e-05 20.0% 55.26
WD 3: Seg 10 112-152 9.78 518.58 6.4e-06 27.5% 51.29
WD 4: Seg 14 156-196 8.55 468.01 3.1e-05 40.0% 55.08
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 35-69 --------TSTNKVKCPVFVVRWTPEGRRLVTGASSG--EFTLWN
WD 2 73-111 -F-NFETI--LQAHDSPVRAMTWSHNDMWMLTADHGG--YVKYWQ
WD 3 112-152 SNMNNVKM--FQAHKEAIREASFSPTDNKFATCSDDG--TVRIWD
WD 4 156-196 -C-HEERI--LRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWD
WD40 Template TG-ECLRT--LSGHTSGVTSVSFSPDGKRLVSGSEDG--TIKVWD