WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000397547    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000397547 (Len=205)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000397547, Len=205):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQ 80  
WD40-rpts                                        (_______________WD 1______________)   (_______

Query       81 AHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEER 160 
WD40-rpts      __________WD 2________________)(__________________WD 3_________________)   (____

Query      161 ILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLAT 205 
WD40-rpts      ______________WD 4_________________)         



4 WD40-repeats found in QUERY=ENSP00000397547 (Len=205):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-69       7.88  440.10  7.3e-05       25.0%     41.91
  WD 2:  Seg  6    73-111      9.01  486.92  1.7e-05       20.0%     55.26
  WD 3:  Seg 10   112-152      9.78  518.58  6.4e-06       27.5%     51.29
  WD 4:  Seg 14   156-196      8.55  468.01  3.1e-05       40.0%     55.08
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   35-69     --------TSTNKVKCPVFVVRWTPEGRRLVTGASSG--EFTLWN
   WD 2   73-111    -F-NFETI--LQAHDSPVRAMTWSHNDMWMLTADHGG--YVKYWQ
   WD 3  112-152    SNMNNVKM--FQAHKEAIREASFSPTDNKFATCSDDG--TVRIWD
   WD 4  156-196    -C-HEERI--LRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWD

   WD40 Template    TG-ECLRT--LSGHTSGVTSVSFSPDGKRLVSGSEDG--TIKVWD


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Last modified: 09 Jan 2019