Input parameters:

  Query = ENSP00000397869 (Len=730)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000397869, Len=730):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENPQDIFSSNGGCLSDIVIEKYLVESKESVSHVQLACSMQDCAFPLDGTELCIWNTKDPSHQLLILRGHHQPITAMAFG 80  
WD40-rpts                      (_________________WD 1_________________)    (_________________WD

Query       81 NKVNPLLICSASLDYVIMWNLDECREKVLQAYPLLSLFIDAESRQLVTGCADGQLWIFSLMDGHHYRRVARVDLRKKTET 160 
WD40-rpts       2_________________)(_________________WD 3________________)                     

Query      161 FSTRRVKSGLCSQPEESQLPSTSALGKGEQVEVTFPVLRLAPCDLSLIPNSACGCLSSENTRCVWIGSSVGLFVFNLANL 240 
WD40-rpts                                  (________________WD 4________________)             (

Query      241 EVEAALYYKDFQSLSILLAGSCALRNRTADQKVLCLLASLFGGKIAVLEINPAALVRAQQCPSMGQSLSVPASSCVLPTS 320 
WD40-rpts      _________________WD 5________________)                                          

Query      321 PLYLGIAKEKSTKAASEQRRAARNVMKDQRLVFHSKVRSSGYASAPHVTMFSPKTNIKSEGKGSSRSRSSCAREAYPVEC 400 
WD40-rpts                                      (_________________WD 6________________)(________

Query      401 AVPTKPGPQVAAAPTCTRVCCIQYSGDGQWLACGLANHLLLVFDASLTGTPAVFSGHDGAVNAVCWSQDRRWLLSAARDG 480 
WD40-rpts      ________________WD 7_______________________)   (_________________WD 8___________

Query      481 TLRMWSARGAELALLLGKDMFSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDEIKRYKQKSKSKLICRLSTTGAV 560 
WD40-rpts      _____)(____________________WD 9___________________)           (_________________

Query      561 DMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAVIAEAHSRPVHQICQNKGSSFTTQQPQAYNLFLTTAIGDGMRL 640 
WD40-rpts      ____WD10____________________)(________________________WD11______________________

Query      641 WDLRTLRCERHFEGHPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTVTGVAFNPSAPQLATATL 720 
WD40-rpts      _)   (__________________WD12_________________)   (_________________WD13_________

Query      721 DGKLQLFLAE 730 
WD40-rpts      _______)  

13 WD40-repeats found in QUERY=ENSP00000397869 (Len=730):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-56       5.71  350.41  0.00118       10.0%     52.45
  WD 2:  Seg  5    61-100      7.35  418.25  0.00014       20.0%     53.18
  WD 3:  Seg  9   101-139      7.20  412.24  0.00017       22.5%     48.17
  WD 4:  Seg 16   189-226      3.00  238.61  0.03725       17.5%     40.53
  WD 5:  Seg 21   240-278      5.93  359.76  0.00088        7.5%     45.05
  WD 6:  Seg 28   353-391      7.08  407.12  0.00020       17.5%     34.36
  WD 7:  Seg 31   392-444      7.18  411.25  0.00018       22.5%     51.51
  WD 8:  Seg 35   448-486      9.66  513.57  7.4e-06       32.5%     51.66
  WD 9:  Seg 39   487-531      5.56  344.13  0.00143       15.0%     50.86
  WD10:  Seg 44   543-589      5.11  325.66  0.00254       15.0%     34.13
  WD11:  Seg 48   590-642      5.32  334.30  0.00194       10.0%     52.99
  WD12:  Seg 52   646-686      7.90  440.92  7.1e-05       30.0%     55.07
  WD13:  Seg 56   690-728      9.34  500.27  1.1e-05       30.0%     53.50

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     DI----VI-------------EKYLVESKES--VSHVQLAC-SM----------QDCAFPLDGTELCIWN
   WD 2   61-100    -S----HQ-------------LLILRGHHQP--ITAMAFGNKVN----------PLLICSASLDYVIMWN
   WD 3  101-139    LD----EC--------------REKVLQAYP--LLSLFIDA-ES----------RQLVTGCADGQLWIFS
   WD 4  189-226    -E----QV-------------EVTFPVLRLA--PCDLSLIP-NS----------ACGCL-SSENTRCVWI
   WD 5  240-278    -L----EV-------------EAALYYKDFQ--SLSILLAG-SC----------ALRNRTADQKVLCLLA
   WD 6  353-391    -F----HS-------------KVRSSGYASA--PHVTMFSP-KT----------NIKSEGKGSSRSRSSC
   WD 7  392-444    AR----EAYPVECAVPTKPGPQVAAAPTCTR--VCCIQYSG-DG----------QWLACGLANHLLLVFD
   WD 8  448-486    -T----GT-------------PAVFSGHDGA--VNAVCWSQ-DR----------RWLLSAARDGTLRMWS
   WD 9  487-531    ARGAELAL-------------LLGKDMFSKP--IQSAQFYYIDA----------FILLSSGPEFQLLRYH
   WD10  543-589    KQ----KS------KSKLICRLSTTGAVDMT--SLSAVNDF-YS----------HIVLAAGRNRTVEVFD
   WD11  590-642    LN-AGCSA-------------AVIAEAHSRP--VHQICQNK-GSSFTTQQPQAYNLFLTTAIGDGMRLWD
   WD12  646-686    -L----RC-------------ERHFEGHPTRGYPCGIAFSP-CG----------RFAACGAEDRHAYVYE
   WD13  690-728    -S----TF-------------SHRLAGHTDT--VTGVAFNP-SA----------PQLATATLDGKLQLFL

   WD40 Template    TG----EC-------------LRTLSGHTSG--VTSVSFSP-DG----------KRLVSGSEDGTIKVWD