WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000398662    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000398662 (Len=208)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000398662, Len=208):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVA 80  
WD40-rpts              (________________WD 1_______________)   (_______________WD 2____________

Query       81 CWEWSSGARTQHFRGHTGAVFSVDYNDELDILVSGSADFTVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPG 160 
WD40-rpts      __)   (_________________WD 3________________)   (_____________________WD 4______

Query      161 DYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGK 208 
WD40-rpts      _______________)                                



4 WD40-repeats found in QUERY=ENSP00000398662 (Len=208):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-45       7.48  423.53  0.00012       27.5%     49.24
  WD 2:  Seg  6    49-83       7.74  434.23  8.7e-05       30.0%     48.51
  WD 3:  Seg 10    87-125     10.27  538.79  3.4e-06       42.5%     53.33
  WD 4:  Seg 14   129-176      8.54  467.27  3.1e-05       37.5%     54.76
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    9-45     AFETSSLIGHSARVYALYYKD---------G--LLCTGSDDLSAKLWD
   WD 2   49-83     GQCVYGIQTH----TCAAVKF---------DEQKLVTGSFDNTVACWE
   WD 3   87-125    GARTQHFRGHTGAVFSVDYND---------ELDILVSGSADFTVKVWA
   WD 4  129-176    GTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWP

   WD40 Template    GECLRTLSGHTSGVTSVSFSP---------DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019