Input parameters:
Query = ENSP00000398662 (Len=208)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000398662, Len=208):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVA 80
WD40-rpts (________________WD 1_______________) (_______________WD 2____________
Query 81 CWEWSSGARTQHFRGHTGAVFSVDYNDELDILVSGSADFTVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPG 160
WD40-rpts __) (_________________WD 3________________) (_____________________WD 4______
Query 161 DYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGK 208
WD40-rpts _______________)
4 WD40-repeats found in QUERY=ENSP00000398662 (Len=208):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 9-45 7.48 423.53 0.00012 27.5% 49.24
WD 2: Seg 6 49-83 7.74 434.23 8.7e-05 30.0% 48.51
WD 3: Seg 10 87-125 10.27 538.79 3.4e-06 42.5% 53.33
WD 4: Seg 14 129-176 8.54 467.27 3.1e-05 37.5% 54.76
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 9-45 AFETSSLIGHSARVYALYYKD---------G--LLCTGSDDLSAKLWD
WD 2 49-83 GQCVYGIQTH----TCAAVKF---------DEQKLVTGSFDNTVACWE
WD 3 87-125 GARTQHFRGHTGAVFSVDYND---------ELDILVSGSADFTVKVWA
WD 4 129-176 GTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWP
WD40 Template GECLRTLSGHTSGVTSVSFSP---------DGKRLVSGSEDGTIKVWD