WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000400248 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000400248 (Len=1564) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000400248, Len=1564): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQRGKPCRALPTLKCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIGDQYGPCLIPS 80
WD40-rpts
Query 81 RIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATLTSVLRSGAQEARRLGLITQEQWQ 160
WD40-rpts
Query 161 HYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDRLADGCLDADAQNLLSSLKSHITDMHPGVLK 240
WD40-rpts
Query 241 THRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLA 320
WD40-rpts
Query 321 RLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLP 400
WD40-rpts
Query 401 LPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQ 480
WD40-rpts
Query 481 RVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLATTAE 560
WD40-rpts
Query 561 EATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGY 640
WD40-rpts
Query 641 YLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFS 720
WD40-rpts
Query 721 HTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCAPHLDSPEVGLVREALQLCRPAVEL 800
WD40-rpts
Query 801 RGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEE 880
WD40-rpts (_________________WD 1_
Query 881 KLLVIGTQDGIMAVWDMEEQHVIHMLTGHTGEVRCVKIFAKGTLANSASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQ 960
WD40-rpts _______________) (_________________WD 2________________) (___________
Query 961 IWNLHVDEAHKVVYSASGSKINAWNLETAEPVFHILGDASDPWMCMAVLASQATLLTVSRDGVVSLWSSATGKLQGKQHM 1040
WD40-rpts _____WD 3_______________) (_________________WD 4_________________) (____
Query 1041 SSIKEETPTCAVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRF 1120
WD40-rpts ____________WD 5________________)(________________WD 6________________)(________
Query 1121 MAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVSLLARGGALVASASPQSSSFKVWDLS 1200
WD40-rpts ____________WD 7___________________) (________________WD 8________________)
Query 1201 DAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTSSEIRCLEVAEQRKLLFTGLVSGVVL 1280
WD40-rpts (__________________WD 9_________________) (________________WD10______________
Query 1281 VFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSGDPCPVIDGPRYTFYTQLPETLSSVAILTDY 1360
WD40-rpts __)(___________________WD11__________________) (________________WD12__
Query 1361 RVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKEQLVVSGSEDALLCLWDLQARKWKFEMSYTSSYCRGVQCAC 1440
WD40-rpts ______________) (_________________WD13________________) (______________
Query 1441 FSKDDKYVYVGLKDRSILVWSVLDGTLLTVQFVHAVVNRIIPTTSGFIAPTRHGYLIRENFQCLSAKASPQDPLKNFKKA 1520
WD40-rpts _WD14_______________) (____________
Query 1521 MWMVKSRQREELVAAAGAPQDLESESAQGNETKSNKCSQVCLIV 1564
WD40-rpts _____WD15________________)
 15 WD40-repeats found in QUERY=ENSP00000400248 (Len=1564): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 858-896 7.30 416.39 0.00015 40.0% 56.49 WD 2: Seg 16 900-938 8.39 461.06 3.8e-05 30.0% 58.54 WD 3: Seg 21 949-985 4.50 300.68 0.00551 12.5% 34.13 WD 4: Seg 24 989-1028 6.27 373.73 0.00057 20.0% 57.88 WD 5: Seg 28 1036-1073 5.82 354.90 0.00103 25.0% 47.17 WD 6: Seg 32 1074-1111 5.48 340.87 0.00159 17.5% 44.85 WD 7: Seg 35 1112-1156 7.56 426.91 0.00011 22.5% 53.02 WD 8: Seg 39 1161-1198 5.60 346.07 0.00135 22.5% 47.99 WD 9: Seg 43 1202-1242 5.98 361.65 0.00083 12.5% 46.65 WD10: Seg 46 1246-1283 6.10 366.76 0.00071 22.5% 53.95 WD11: Seg 50 1284-1326 4.48 299.69 0.00568 17.5% 47.30 WD12: Seg 54 1338-1375 5.12 325.98 0.00252 15.0% 45.86 WD13: Seg 57 1378-1416 8.18 452.60 4.9e-05 35.0% 55.26 WD14: Seg 62 1426-1461 7.74 434.38 8.7e-05 30.0% 47.05 WD15: Seg 69 1508-1546 5.99 362.24 0.00082 5.0% 30.21Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 858-896 -G-----P----LRATLSGCHKG-ITAMAWGVEEKL--LVIGTQDGIMAVWD WD 2 900-938 -Q-----H----VIHMLTGHTGE-VRCVKIFAKGTL--ANSASKDYTLHLWN WD 3 949-985 -------W----DGGSKNPAEPQ-IWNLHVDEAHKV--VYSAS-GSKINAWN WD 4 989-1028 -A-----E----PVFHILGDASDPWMCMAVLASQAT--LLTVSRDGVVSLWS WD 5 1036-1073 -G-----K----QHMSSIKEETP-TCAVSVQKQGK---LVTGFSNGSISLVS WD 6 1074-1111 -S-----K----GDRLLEKLPDA-VRFLVVSEDESL--LAAGF-GRSVRIFL WD 7 1112-1156 ADSRGFRR----FMAMDLEHEDM-VETAVFGTENNL--IITGSLDALIQVWS WD 8 1161-1198 -G-----T----LLDILEGVGAP-VSLLARGGAL-V--ASASPQSSSFKVWD WD 9 1202-1242 -A-----H----RSRVPAPFLDR-TGLTAVSHNGSYVYFPKIGDKNKVTIWD WD10 1246-1283 -G-----E----EQDSLDTS-SE-IRCLEVAEQRKL--LFTGLVSGVVLVFP WD11 1284-1326 LN-----SRQDVICIPPPEARKA-INCMSLSKCEDR--LAIAY-DNIVLVLD WD12 1338-1375 -G-----P----RYTFYTQLPET-LSSVAILTDYRV--VYSMT-NGDLFLYE WD13 1378-1416 -T-----S----KAFPLETHRSR-VACVEVSHKEQL--VVSGSEDALLCLWD WD14 1426-1461 -------------MSYTSSYCRG-VQCACFSKDDKY--VYVGLKDRSILVWS WD15 1508-1546 -A-----S----PQDPLKNFKKA-MWMVKSRQREEL--VAAAGAPQDLESES WD40 Template TG-----E----CLRTLSGHTSG-VTSVSFSPDGKR--LVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |