WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000401297 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000401297 (Len=848) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000401297, Len=848): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MHLAKDLNSQERSIPPSENQNSQESNGEGNCLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPE 80
WD40-rpts
Query 81 LPSLERKNKRRKIKGKKERSQVDQLLNISLREEELSKSLQCMDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTH 160
WD40-rpts
Query 161 RIQILQGLQETYEPSEHPDQVPCSLTRERRNSRSQTSIDAALLPTPFFPLFLEPPSSHVSPSPTGASLQITTSPTFQTHG 240
WD40-rpts
Query 241 SVPAPDSSVQIKQEPMSPEQDENVNAVPPSSACNVSKELLEANKTPLEKEPHSPADQPEQQAESTLTSAETRGSKKKKKL 320
WD40-rpts
Query 321 RKKKSLRAAHVPENSDTEQDVLTVKPVRKVKAGKLIKGGKVTTSTWEDSRTGREQESVRDEPDSDSSLEVLEIPNPQLEV 400
WD40-rpts (_________________WD 1_________________) (_____________
Query 401 VAIDSSESGEEKPDSPSKKDIWNSTEQNPLETSRSGCDEVSSTSEIGTRYKDGIPVSVAETQTVISSIKGSKNSSEISSE 480
WD40-rpts ___WD 2_______________) (_________________WD 3_______
Query 481 PGDDDEPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKNAALYTGSSD 560
WD40-rpts _________)_____________WD 4______________) (__________________WD 5____________
Query 561 HTIRCYNVKSRECVEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVV 640
WD40-rpts ______) (_______________WD 6_______________) (__________________WD 7________
Query 641 GSYDCTISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVT 720
WD40-rpts __________) (________________WD 8_______________) (________________WD 9_____
Query 721 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCSLIFGVVDHLKQHLL 800
WD40-rpts __________) (________________WD10_______________) (_________________WD11____
Query 801 TDHTNPNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS 848
WD40-rpts ____________)
 11 WD40-repeats found in QUERY=ENSP00000401297 (Len=848): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 344-383 3.23 248.12 0.02786 10.0% 1.41 WD 2: Seg 5 387-423 4.24 289.75 0.00773 10.0% 43.71 WD 3: Seg 10 452-490 5.26 331.75 0.00210 10.0% 33.68 WD 4: Seg 13 489-522 6.32 375.71 0.00054 25.0% 42.34 WD 5: Seg 17 526-567 8.06 447.68 5.8e-05 32.5% 53.72 WD 6: Seg 21 571-606 6.02 363.31 0.00079 17.5% 49.21 WD 7: Seg 25 610-651 6.75 393.40 0.00031 35.0% 54.01 WD 8: Seg 29 655-691 7.37 419.04 0.00014 30.0% 52.69 WD 9: Seg 33 695-731 7.50 424.56 0.00012 32.5% 52.46 WD10: Seg 37 735-771 6.40 379.02 0.00049 17.5% 52.95 WD11: Seg 41 775-813 5.35 335.77 0.00186 10.0% 54.10Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 344-383 VKPVRKVKAGKLI-KGGKVTT---STWE--DSRTGREQESVRDEPD WD 2 387-423 -SLEVLEIPNPQL-EVVAIDS---SESG--EEKPDS--PSKKDIWN WD 3 452-490 -DGIPVSVAETQT-VISSIKG---SKNS--SEISSEPGDDDEPTEG WD 4 489-522 EG----SFEGHQA-AVNAIQI---F--G--NLLYTCSADKTVRVYN WD 5 526-567 -RKCIGVFEGHTS-KVNCLLVTQTSGKN--AALYTGSSDHTIRCYN WD 6 571-606 -RECVEQLQLEDR----VLCL---HSRW--RILYAGLANGTVVTFN WD 7 610-651 -NKRLEIFECHGPRAVSCLAT---AQEGARKLLVVGSYDCTISVRD WD 8 655-691 -GLLLRTLEGHSK-TILCMKV---VND----LVFSGSSDQSVHAHN WD 9 695-731 -GELVRIYKGHNH-AVTVVNI---L--G--KVMVTACLDKFVRVYE WD10 735-771 -HDRLQVYGGHKD-MIMCMTI-----HK--SMIYTGCYDGSIQAVR WD11 775-813 -MQNYRCWWHGCS-LIFGVVD---HLKQ--HLLTDHTNPNFQTLKC WD40 Template TGECLRTLSGHTS-GVTSVSF---SPDG--KRLVSGSEDGTIKVWD |
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