WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000411964 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000411964 (Len=1525) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000411964, Len=1525): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTK 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2___
Query 81 IAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTT 160
WD40-rpts _____________)(____________________WD 3___________________) (_________________W
Query 161 NCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE 240
WD40-rpts D 4________________) (________________WD 5_______________) (__________
Query 241 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRS 320
WD40-rpts ______WD 6________________) (_________________WD 7________________)
Query 321 IYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEK 400
WD40-rpts (_________________WD 8________________) (_________________WD 9______
Query 401 YFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG 480
WD40-rpts ___________) (____________________WD10____________________) (_____
Query 481 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTM 560
WD40-rpts ____________WD11________________)
Query 561 FTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQ 640
WD40-rpts
Query 641 LHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR 720
WD40-rpts
Query 721 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVE 800
WD40-rpts
Query 801 HITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMKAVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEA 880
WD40-rpts
Query 881 RCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL 960
WD40-rpts
Query 961 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELE 1040
WD40-rpts
Query 1041 AEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVARTQGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHA 1120
WD40-rpts
Query 1121 ADNCSFEFAFELSRLALKHKTPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA 1200
WD40-rpts
Query 1201 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEALQEEYEREATKKGARGVEGFV 1280
WD40-rpts
Query 1281 EQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAELSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDL 1360
WD40-rpts
Query 1361 VKEAIDAFIEGEEWNKAKRVAKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK 1440
WD40-rpts
Query 1441 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAYHSWADLRDVLFNLAVLSPSS 1520
WD40-rpts
Query 1521 SVKTW 1525
WD40-rpts
 11 WD40-repeats found in QUERY=ENSP00000411964 (Len=1525): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-44 6.16 369.30 0.00066 15.0% 47.07 WD 2: Seg 5 56-94 6.82 396.53 0.00028 22.5% 45.89 WD 3: Seg 8 95-139 4.72 309.75 0.00416 15.0% 53.61 WD 4: Seg 12 142-180 6.86 398.02 0.00027 32.5% 52.74 WD 5: Seg 16 187-223 4.56 302.85 0.00515 17.5% 42.52 WD 6: Seg 19 230-267 4.29 292.05 0.00720 22.5% 43.32 WD 7: Seg 23 276-314 6.09 366.06 0.00073 22.5% 45.92 WD 8: Seg 28 332-370 2.93 235.86 0.04050 17.5% 48.72 WD 9: Seg 32 373-412 3.96 278.33 0.01100 15.0% 53.42 WD10: Seg 37 427-472 4.73 310.06 0.00412 25.0% 40.49 WD11: Seg 41 475-513 5.09 325.06 0.00259 17.5% 53.38Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-44 HLR-----TLLS------PQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYD WD 2 56-94 -KP-----ADMK------YGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYK WD 3 95-139 IGEDWGDKKVIC------NKFIQTSAVTCLQWPAEYIIVFGLAEGKVRLAN WD 4 142-180 -TN-----KSST------IYGTESYVVSLTTNCSGKGILSGHADGTIVRYF WD 5 187-223 -GE-----SQGK------LVNHPCPPYALAWATNS--IVAAGCDRKIVAYG WD 6 230-267 -QT-----FDYS------RDPQEREFTTAVSSPGGQSVVLGSYD-RLRVFN WD 7 276-314 -EE-----AKPK------EITNLYTITALAWKRDGSRLCVGTLCGGVEQFD WD 8 332-370 -GP-----SQVI------VKNLSSGTRVVLKSHYGYEVEEVKILGKERYLV WD 9 373-412 TSE-----TLLL------GDLNTNRLSEIAWQGSGGNEKYFFENENVCMIF WD10 427-472 TLG-----SVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVD WD11 475-513 -GG-----YNIG------TVSHESRVDWLELNETGHKLLFRDRKLRLHLYD WD40 Template TGE-----CLRT------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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