WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000413432 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000413432 (Len=1070) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000413432, Len=1070): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIKRVQNLLGHYLIHGFRVRPEPNGDLDLEAMVAVFGSKGLRVVKISWGQGHFWELWRSGLWNMSDWIWDARWLEGNIAL 80
WD40-rpts (_____________________WD 1____________________)(___________________WD 2_________
Query 81 ALGHNSVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVGI 160
WD40-rpts __________) (___________________WD 3__________________) (____________
Query 161 IFSMSYLESKGLLATASEDRSVRIWKVGDLRVPGGRVQNIGHCFGHSARVWQVKLLENYLISAGEDCVCLVWSHEGEILQ 240
WD40-rpts _____WD 4________________)(_____________________WD 5____________________) (____
Query 241 AFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLWHLVGRGYRGLGVSALCFKSRSRPGTLKAVTLAGSWRLLAVTDTGAL 320
WD40-rpts _____________WD 6_________________) (________________WD 7_____________
Query 321 YLYDVEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLFPGKVHSLSWALRGYEEL 400
WD40-rpts ___) (_________________WD 8_________________) (__________________WD 9____
Query 401 LLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVLLFPSRPGLLKDPGVG 480
WD40-rpts ______________) (_________________WD10________________)(___________
Query 481 GKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCR 560
WD40-rpts ______WD11_________________)(_______________WD12_______________) (____________
Query 561 GMNWLAGLRIVPDGSMVILGFHANEFVVWNPRSHEKLHIVNCGGGHRSWAFSDTEAAMAFAYLKDGDVMLYRALGGCTRP 640
WD40-rpts _______WD13__________________) (____________
Query 641 HVILREGLHGREITCVKRVGTITLGPEYGVPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAVC 720
WD40-rpts _____WD14________________)(_________________WD15________________) (_______
Query 721 NHISSVRAVAVWGIGTPGGPQDPQPGLTAHVVSAGGRAEMHCFSIMVTPDPSTPSRLACHVMHLSSHRLDEYWDRQRNRH 800
WD40-rpts __________WD16________________)
Query 801 RMVKVDPETRYMSLAVCELDQPGLGPLVAAACSDGAVRLFLLQDSGRILQLLAETFHHKRCVLKVHSFTHEAPNQRRRLL 880
WD40-rpts (_______________WD17_______________) (_______________________WD18_________
Query 881 LCSAATDGSLAFWDLTTMLDHDSTVLEPPVDPGLPYRLGTPSLTLQAHSCGINSLHTLPTREGHHLVASGSEDGSLHVFV 960
WD40-rpts _____________) (__________________WD19__________________)
Query 961 LAVEMLQLEEAVGEAGLVPQLRVLEEYSVPCAHAAHVTGLKILSPSIMVSASIDQRLTFWRLGHGEPTFMNSTVFHVPDV 1040
WD40-rpts (________________WD20_______________)
Query 1041 ADMDCWPVSPEFGHRCALGGQGLEVYNWYD 1070
WD40-rpts
 20 WD40-repeats found in QUERY=ENSP00000413432 (Len=1070): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-47 3.24 248.56 0.02749 15.0% 13.36 WD 2: Seg 5 48-91 3.95 277.89 0.01115 7.5% 48.09 WD 3: Seg 9 95-137 5.35 335.81 0.00185 17.5% 49.45 WD 4: Seg 13 148-186 8.48 464.80 3.4e-05 27.5% 52.07 WD 5: Seg 17 187-233 6.06 365.02 0.00075 27.5% 54.60 WD 6: Seg 21 236-275 7.71 433.33 9.0e-05 25.0% 58.51 WD 7: Seg 25 287-324 4.59 304.13 0.00495 12.5% 54.03 WD 8: Seg 29 331-370 5.47 340.54 0.00160 17.5% 46.77 WD 9: Seg 33 374-415 5.04 322.98 0.00276 15.0% 49.28 WD10: Seg 37 430-468 6.46 381.54 0.00045 20.0% 46.71 WD11: Seg 41 469-508 7.24 413.93 0.00016 12.5% 12.10 WD12: Seg 44 509-544 5.73 351.54 0.00114 15.0% 43.96 WD13: Seg 48 548-590 6.58 386.36 0.00039 20.0% 55.70 WD14: Seg 55 628-666 5.98 361.57 0.00083 20.0% 41.22 WD15: Seg 59 667-705 6.56 385.58 0.00040 12.5% 22.49 WD16: Seg 61 713-751 6.67 390.29 0.00034 15.0% 29.28 WD17: Seg 67 806-841 6.11 367.05 0.00070 12.5% 35.90 WD18: Seg 70 844-894 6.66 389.88 0.00035 22.5% 36.22 WD19: Seg 73 919-960 4.74 310.40 0.00408 35.0% 46.75 WD20: Seg 79 985-1021 5.94 360.14 0.00087 22.5% 49.55Multiple sequence alignment of 20 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-47 MI---------K------RVQNLLGHY----LIHGFRVR-PEPNGDLDLEAM---VA-VFGSKGLRVVKIS WD 2 48-91 WG---------QGHFWELWRSGLWNMS-----------D-WIWDARWLEGN-----I-ALALGHNSVVLYD WD 3 95-137 -G---------C------ILQEVPCTD-------RCTLS-SACLIGDAWKEL---TI-VAGAVSNQLLVWY WD 4 148-186 -V---------A------PDRRISGHV-----------G-IIFSMSYLESKG---LL-ATASEDRSVRIWK WD 5 187-233 VGDLRVPGGRVQ------NIGHCFGHS-----------A-RVWQVKLLEN-----YL-ISAGEDCVCLVWS WD 6 236-275 -G---------E------ILQAFRGHQ-----------GRGIRAIAAHERQA---WV-ITGGDDSGIRLWH WD 7 287-324 -S---------A------LCFKSRSRP-----------G-TLKAVTLAGSW----RL-LAVTDTGALYLYD WD 8 331-370 -E---------Q------LLEDKHFQS-----------Y-CLLEAAPGPEGF---GLCAMANGEGRVKVVP WD 9 374-415 -P---------T------AAVDQTLFP-----------G-KVHSLSWALRGYEELLL-LASGPGGVVACLE WD10 430-468 -R---------C------RYLLPPSKQ-----------R-WHTCSAFLPPGD---FL-VCGDRRGSVLLFP WD11 469-508 SR---------P------GLLKDPGVG-----------G-KARAGAGAPVVG---SG-SSGGGNAFTGLGP WD12 509-544 -------------------VSTLPSLH-----------G-KQGVTSVTCHGG---YV-YTTGRDGAYYQLF WD13 548-590 -G---------Q------LQPVLRQKS-------CRGMN-WLAGLRIVPDGS---MV-ILGFHANEFVVWN WD14 628-666 -V---------M------LYRALGGCT-----------R-PHVILREGLHGR---EI-TCVKRVGTITLGP WD15 667-705 -E---------Y------GVPSFMQPD-----------D-LEPGSEGPDLTD---IV-ITCSEDTTVCVLA WD16 713-751 -A---------H------ALTAVCNHI-----------S-SVRAVAVWGIGT---PG-GPQDPQPGLTAHV WD17 806-841 DP---------E----------TRYMS-----------L-AVCELDQPGLGP---LV-AAACSDGAVRLFL WD18 844-894 DS---------G------RILQLLAETFHHKRCVLKVHS-FTHEAPNQRRRL---LL-CSAATDGSLAFWD WD19 919-960 -G---------T------PSLTLQAHS-----------C-GINSLHTLPTREGHHLV-ASGSEDGSLHVFV WD20 985-1021 -----------E------EYSVPCAHA-----------A-HVTGLKIL-SPS---IM-VSASIDQRLTFWR WD40 Template TG---------E------CLRTLSGHT-----------S-GVTSVSFSPDGK---RL-VSGSEDGTIKVWD |
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