WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000414851 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000414851 (Len=891) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000414851, Len=891): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVS 80
WD40-rpts (_________________WD 1_________________) (___________________WD 2_________
Query 81 GGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLWSKKGPEVMCLQTLNFGNG 160
WD40-rpts __________)(_______________________WD 3_______________________)
Query 161 FALALCLSFLPNTDVTWKTGQVERGRAWKPPASLALCSRSCDSMVSCYASILCKALWKEKLHTFWHHNRISFLPSAFRPI 240
WD40-rpts (_________________WD 4_________________) (___________________WD 5____
Query 241 PILACGNDDCRIHIFAQQNDQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRL 320
WD40-rpts _______________) (__________________WD 6_________________)
Query 321 KENTFTIENESVKIAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVG 400
WD40-rpts (______________________WD 7_____________________)(______________
Query 401 EVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLF 480
WD40-rpts ________WD 8_____________________) (_______________WD 9______________
Query 481 APWKRKDQSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSLNHVLCNQDSDLPE 560
WD40-rpts ) (________________WD10________________) (____________________WD11__
Query 561 GATVPALGLSNKAVFQGDIASQPSDEEELLTSTGFEYQQVAFQPSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTC 640
WD40-rpts _________________) (________________WD12________________)(__________________
Query 641 NSSKTLLASACKAAKKEHAAIILWNTTSWKQVQNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVF 720
WD40-rpts _WD13___________________) (_________________WD14________________)
Query 721 SLFAFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVGGAVTAVSVCPVLHPS 800
WD40-rpts (_________________WD15________________)(_________________________WD16________
Query 801 QRYVVAVGLECGKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHT 880
WD40-rpts _________________)(_______________________________WD17__________________________
Query 881 VKIHRVNKCAL 891
WD40-rpts ____)
 17 WD40-repeats found in QUERY=ENSP00000414851 (Len=891): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-44 6.01 362.80 0.00080 10.0% 48.35 WD 2: Seg 5 48-91 6.25 372.85 0.00059 27.5% 55.02 WD 3: Seg 9 92-143 5.82 355.22 0.00102 22.5% 56.27 WD 4: Seg 15 170-209 5.85 356.39 0.00098 15.0% 42.48 WD 5: Seg 19 213-256 4.27 291.04 0.00743 27.5% 46.21 WD 6: Seg 23 262-302 7.02 404.66 0.00022 27.5% 51.65 WD 7: Seg 30 337-385 7.85 438.98 7.5e-05 32.5% 51.85 WD 8: Seg 34 386-434 7.20 411.90 0.00017 22.5% 56.85 WD 9: Seg 38 447-481 7.59 428.34 0.00010 22.5% 49.10 WD10: Seg 41 493-530 5.01 321.59 0.00288 12.5% 48.79 WD11: Seg 45 534-578 4.44 297.89 0.00601 10.0% 41.73 WD12: Seg 48 584-621 3.90 275.61 0.01196 15.0% 26.03 WD13: Seg 52 622-665 6.34 376.46 0.00053 22.5% 53.49 WD14: Seg 56 669-707 9.00 486.61 1.7e-05 32.5% 56.53 WD15: Seg 60 724-762 7.41 420.90 0.00013 30.0% 45.01 WD16: Seg 63 763-818 4.43 297.75 0.00603 22.5% 48.31 WD17: Seg 67 819-885 3.78 270.88 0.01384 17.5% 43.35Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-44 VLE---------T--------------SHVFCCPNR-VRGVLNWSS-------------GPR--------G------LLAFG-----TSCSVVLYD WD 2 48-91 -RV---------V--------------VTNLNGHTA-RVNCIQWIC--------KQDGSPST--------E------LVSGG-----SDNQVIHWE WD 3 92-143 IED-----NQLLK--------------AVHLQGHEG-PVYAVHAVY-------------QRRTSDPALCTL------IVSAA-----ADSAVRLWS WD 4 170-209 LPN---------T--------------DVTWKTGQV-ERGRAWKPP-------------ASL--------A------LCSRS-----CDSMVSCYA WD 5 213-256 -CK---------A--------------LWKEKLHTFWHHNRISFLP-------------SAF--------R--PIPILACGN-----DDCRIHIFA WD 6 262-302 -FQ---------K--------------VLSLCGHED-WIRGVEWAA-------------FGR------DLF------LASCS-----QDCLIRIWK WD 7 337-385 AVT---------L--------------ETVLAGHEN-WVNAVHWQP----VFYKDGVLQQPV--------R------LLSAS-----MDKTMILWA WD 8 386-434 PDEESGVWLEQVR--------------VGEVGGNTL-GFYDCQFNE-------------DGS--------M------IIAHA-----FHGALHLWK WD 9 447-481 ----------------------------IVISGHFD-GVQDLVWDP-------------EGE--------F------IITVG-----TDQTTRLFA WD10 493-530 -WH---------E--------------IARPQIHGY-DLKCLAMIN-------------RFQ---------------FVSGA-----DEKVLRVFS WD11 534-578 -NF---------V--------------ENFCAITGQ-SLNHVLCNQ-------------DSD--------LPEGATVPALGL-----SNKAVFQGD WD12 584-621 -SD---------E--------------EELLTSTGF-EYQQVAFQP-------------SI---------L------TEPPT-----EDHLLQNTL WD13 622-665 -WP---------E--------------VQKLYGHGY-EIFCVTCNS-------------SKT--------L------LASACKAAKKEHAAIILWN WD14 669-707 -WK---------Q--------------VQNLVFHSL-TVTQMAFSP-------------NEK--------F------LLAVS-----RDRTWSLWK WD15 724-762 -AF---------T--------------NKITSVHSR-IIWSCDWSP-------------DSK--------Y------FFTGS-----RDKKVVVWG WD16 763-818 ECD---------S---TDDCIEHNIGPCSSVLDVGG-AVTAVSVCP--------VLHPSQRY--------V------VAVGL-----ECGKICLYT WD17 819-885 WKK---------TDQVPEINDWTHCVETSQSQSHTL-AIRKLCWKNCSGKTEQKEAEGAEWL--------H------FASCG-----EDHTVKIHR WD40 Template TGE---------C--------------LRTLSGHTS-GVTSVSFSP-------------DGK--------R------LVSGS-----EDGTIKVWD |
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