WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422763    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422763 (Len=1283)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422763, Len=1283):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQVRQVGLLAAGCQPWNKDVCAASGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGST 80  
WD40-rpts        (_________________WD 1________________)       (_________________WD 2__________

Query       81 DNLVIIWNVAEQKVIAKLDSTKGIPASLSWCWNAEDVVAFVSHRGPLFIWTISGPDSGVIVHKDAHSFLSDICMFRWHTH 160 
WD40-rpts      _______)   (_________________WD 3_________________)     (__________________WD 4_

Query      161 QKGKVVFGHIDGSLSIFHPGNKNQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVVNLHYGIRLVDSESLSCITTFNL 240 
WD40-rpts      _________________)         (__________________WD 5_________________)(___________

Query      241 PSAAASVQCLAWVPSAPGMFITGDSQVGVLRIWNVSRTTPIDNLKLKKTGFHCLHVLNSPPRKKFSVQSPTKNHYTSSTS 320 
WD40-rpts      _________WD 6____________________)   (__________________WD 7_________________)(_

Query      321 EAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDIN 400 
WD40-rpts      ______________WD 8_______________)(___________________WD 9___________________)  

Query      401 TLTAVYTSPGNEGVIYSLSWAPGGLNCIAGGTSRNGAFIWNVQKGKIIQRFNEHGTNGIFCIAWSHKDSKRIATCSSDGF 480 
WD40-rpts       (_________________WD10_________________)   (__________________WD11_____________

Query      481 CIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVYYVATSSDQPLKVFSGHTAKVFHVKWSPLREGILCS 560 
WD40-rpts      ____)(__________________WD12_________________)     (_________________WD13_______

Query      561 GSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTREGTCVDTVYDHGADVYGLTCHPSR 640 
WD40-rpts      __________)   (_________________WD14_________________)   (_________________WD15_

Query      641 PFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCGKVSRDIRQEIEKLTANSQVKKLRW 720 
WD40-rpts      ________________)           (________________WD16________________)              

Query      721 FSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKGIMHLKHLIKFRTSEAQELTTVKMSKFGGGIGVPAKEERLKEAAE 800 
WD40-rpts                                            (________________________WD17_____________

Query      801 IHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVHFFMSRGQLKE 880 
WD40-rpts      ___________)                                                                    

Query      881 ALLVAQAACEGNMQPLHVSVPKGASYSDDIYKEDFNELLHKVSKELAEWYFQDGRAVLAACCHLAIDNIELAMAYLIRGN 960 
WD40-rpts                                                                                      

Query      961 ELELAVCVGTVLGESAAPATHYALELLARKCMMISVWNLAADLLLMIPDNELHLIKLCAFYPGCTEEINDLHDKCKLPTV 1040
WD40-rpts                                                                                      

Query     1041 EECMQLAETARADDNIFETVKYYLLSQEPEKALPIGISFVKEYISSSDWTLDTIYPVLDLLSYIRTEKLLLHTCTEARNE 1120
WD40-rpts                                                                                      

Query     1121 LLILCGYIGALLAIRRQYQSIVPALYEYTSQLLKRREVSVPLKIEYLSEELDAWRACTQSTNRSLEDSPYTPPSDSQRMI 1200
WD40-rpts                                                                                      

Query     1201 YATLLKRLKEESLKGIIGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFFLEDGKSAISLNDALMWAKVNPFSPLGTGIRL 1280
WD40-rpts                                                                                      

Query     1281 NPF 1283
WD40-rpts         



17 WD40-repeats found in QUERY=ENSP00000422763 (Len=1283):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       3.11  243.14  0.03244       10.0%     41.84
  WD 2:  Seg  5    49-88       6.27  373.63  0.00057       25.0%     49.63
  WD 3:  Seg  9    92-131      5.42  338.52  0.00170       15.0%     55.41
  WD 4:  Seg 13   137-178      4.34  293.97  0.00678       15.0%     54.79
  WD 5:  Seg 18   188-228      5.78  353.25  0.00108       15.0%     44.30
  WD 6:  Seg 21   229-274      5.63  347.18  0.00130       17.5%     50.44
  WD 7:  Seg 25   278-318      4.37  295.35  0.00650       17.5%     50.40
  WD 8:  Seg 29   319-354      5.27  332.32  0.00207       20.0%     43.52
  WD 9:  Seg 32   355-398      7.31  416.69  0.00015       40.0%     51.64
  WD10:  Seg 36   402-441      6.31  375.11  0.00055       20.0%     56.26
  WD11:  Seg 40   445-485      5.73  351.55  0.00114       27.5%     54.37
  WD12:  Seg 44   486-526      6.61  387.55  0.00037       20.0%     54.87
  WD13:  Seg 48   532-571      8.30  457.38  4.3e-05       45.0%     52.09
  WD14:  Seg 52   575-614      8.06  447.67  5.8e-05       42.5%     54.71
  WD15:  Seg 56   618-657      7.41  420.67  0.00013       27.5%     53.85
  WD16:  Seg 61   669-706      3.39  254.73  0.02275       15.0%     36.21
  WD17:  Seg 68   759-812      3.06  241.09  0.03454       15.0%     32.08
Multiple sequence alignment of 17 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-41     QVR---Q----VGLLAAG-CQPW--NKDVC---A-A-S--G-D-RFAYCAT-------------L-AIYIYQ
   WD 2   49-88     -FK---L----HAIMSEH-KKTI--TAISW---C-PHN--P-D-LFASGST-------------DNLVIIWN
   WD 3   92-131    -QK---V----IAKLDST-KGIP--ASLSW---C-W-N--A-EDVVAFVSH-------------RGPLFIWT
   WD 4  137-178    -SG---V----IVHKDAH-SFLS--DICMFRWHT-H-Q--K-G-KVVFGHI-------------DGSLSIFH
   WD 5  188-228    LRP---E----SLEGTDE-EDPV--TALEW---D-PLS--T-D-YLLVVNL-------------HYGIRLVD
   WD 6  229-274    SES---LSCITTFNLPSA-AASV--QCLAW---V-P-SAPG-M-FITGDSQ-------------VGVLRIWN
   WD 7  278-318    -TT---P----IDNLKLK-KTGFHCLHVLN---S-P-P--R-K-KFSVQSP-------------TKNHYTSS
   WD 8  319-354    TSE---A----V----PP-PTLT--QNQAF---S-L-P--P-G-HAVCCFL-------------DGGVGLYD
   WD 9  355-398    MGAKKWD----FLRDLGH-VETI--FDCKF---K-P-D--DPN-LLATASF-------------DGTIKVWD
   WD10  402-441    -LT---A----VYTSPGN-EGVI--YSLSW---A-P-G--GLN-CIAGGTS-------------RNGAFIWN
   WD11  445-485    -GK---I----IQRFNEHGTNGI--FCIAW---SHK-D--S-K-RIATCSS-------------DGFCIIRT
   WD12  486-526    IDG---K----VLHKYKH-PAAV--FGCDW---S-Q-N--N-KDMIATGCE-------------DTNVRVYY
   WD13  532-571    -DQ---P----LKVFSGH-TAKV--FHVKW---S-P-L--R-EGILCSGSD-------------DGTVRIWD
   WD14  575-614    -DA---C----INILNGH-TAPV--RGLMW---N-T-E-IP-Y-LLISGSW-------------DYTIKVWD
   WD15  618-657    -GT---C----VDTVYDH-GADV--YGLTC---H-P-S--R-PFTMASCSR-------------DSTVRLWS
   WD16  669-706    I-----L----ADRSWEE-IIGN--TDYAI---E-P-G--T-P-PLLCGKV-------------SRDIRQEI
   WD17  759-812    HLK--HL----IKFRTSE-AQEL--TTVKM---S-K-F--G-G-GIGVPAKEERLKEAAEIHLRLGQIQRYC

   WD40 Template    TGE---C----LRTLSGH-TSGV--TSVSF---S-P-D--G-K-RLVSGSE-------------DGTIKVWD


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Last modified: 09 Jan 2019