WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000428955 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000428955 (Len=1358) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000428955, Len=1358): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVDRLADGCLDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTRLRELDT 80
WD40-rpts
Query 81 AGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLARLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKT 160
WD40-rpts
Query 161 VTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVR 240
WD40-rpts
Query 241 HARRVPWLPLNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWAS 320
WD40-rpts
Query 321 LPECGNPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDD 400
WD40-rpts
Query 401 EVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFS 480
WD40-rpts
Query 481 GTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIE 560
WD40-rpts
Query 561 DLLDDFDLCAPHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVL 640
WD40-rpts
Query 641 VPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHTGEVRCVKIFAKGTLAN 720
WD40-rpts (_________________WD 1________________) (_________________WD 2_____
Query 721 SASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQIWNLHVDEAHKVVYSASGSKINAWNLETAEPVFHILGDASDPWMCM 800
WD40-rpts ___________) (________________WD 3_______________) (_________________
Query 801 AVLASQATLLTVSRDGVVSLWSSATGKLQGKQHMSSIKEETPTCAVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDA 880
WD40-rpts WD 4_________________) (________________WD 5________________)(____________
Query 881 VRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRFMAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDI 960
WD40-rpts ____WD 6________________) (_________________WD 7________________) (_____
Query 961 LEGVGAPVSLLARGGALVASASPQSSSFKVWDLSDAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEG 1040
WD40-rpts ___________WD 8________________) (__________________WD 9_________________) (
Query 1041 EEQDSLDTSSEIRCLEVAEQRKLLFTGLVSGVVLVFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLD 1120
WD40-rpts ________________WD10________________)(___________________WD11__________________)
Query 1121 ITSGDPCPVIDGPRYTFYTQLPETLSSVAILTDYRVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKEQLVVSG 1200
WD40-rpts (_________________WD12________________) (_________________WD13_______
Query 1201 SEDALLCLWDLQARKWKFEMSYTSSYCRGVQCACFSKDDKYVYVGLKDRSILVWSVLDGTLLTVQFVHAVVNRIIPTTSG 1280
WD40-rpts _________) (_________________WD14________________)
Query 1281 FIAPTRHGYLIRENFQCLSAKASPQDPLKNFKKAMWMVKSRQREELVAAAGAPQDLESESAQGNETKSNKCSQVCLIV 1358
WD40-rpts (________________________WD15________________________)
 15 WD40-repeats found in QUERY=ENSP00000428955 (Len=1358): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 9 652-690 8.68 473.05 2.6e-05 40.0% 55.90 WD 2: Seg 13 694-732 8.78 477.25 2.3e-05 30.0% 57.82 WD 3: Seg 18 743-779 4.92 318.08 0.00321 12.5% 33.83 WD 4: Seg 21 783-822 6.64 388.78 0.00036 20.0% 58.00 WD 5: Seg 25 830-867 5.97 361.42 0.00084 25.0% 48.69 WD 6: Seg 29 868-905 5.68 349.45 0.00121 17.5% 45.26 WD 7: Seg 32 912-950 7.81 437.14 8.0e-05 22.5% 52.30 WD 8: Seg 36 955-992 5.81 354.72 0.00103 22.5% 50.68 WD 9: Seg 40 996-1036 6.20 370.94 0.00062 12.5% 47.19 WD10: Seg 43 1040-1077 6.35 377.08 0.00052 22.5% 54.34 WD11: Seg 47 1078-1120 4.77 311.52 0.00394 17.5% 48.38 WD12: Seg 52 1131-1169 6.44 380.53 0.00046 15.0% 46.07 WD13: Seg 55 1172-1210 8.29 457.10 4.3e-05 35.0% 54.63 WD14: Seg 59 1217-1255 7.80 436.84 8.1e-05 30.0% 49.70 WD15: Seg 66 1287-1340 5.78 353.24 0.00108 10.0% 37.09Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 652-690 -GP----LRA--------------TLSGCHKG-ITAMAWGVEEK--LLVIGTQDGIMAVWD WD 2 694-732 -QH----VIH--------------MLTGHTGE-VRCVKIFAKGT--LANSASKDYTLHLWN WD 3 743-779 --W----DGG--------------SKNPAEPQ-IWNLHVDEAHK--VVYSAS-GSKINAWN WD 4 783-822 -AE----PVF--------------HILGDASDPWMCMAVLASQA--TLLTVSRDGVVSLWS WD 5 830-867 -GK----QHM--------------SSIKEETP-TCAVSVQKQGK---LVTGFSNGSISLVS WD 6 868-905 -SK----GDR--------------LLEKLPDA-VRFLVVSEDES--LLAAGF-GRSVRIFL WD 7 912-950 -RR----FMA--------------MDLEHEDM-VETAVFGTENN--LIITGSLDALIQVWS WD 8 955-992 -GT----LLD--------------ILEGVGAP-VSLLARGGAL---VASASPQSSSFKVWD WD 9 996-1036 -AH----RSR--------------VPAPFLDR-TGLTAVSHNGSYVYFPKIGDKNKVTIWD WD10 1040-1077 -GE----EQD--------------SLDTS-SE-IRCLEVAEQRK--LLFTGLVSGVVLVFP WD11 1078-1120 LNSRQDVICI--------------PPPEARKA-INCMSLSKCED--RLAIAY-DNIVLVLD WD12 1131-1169 DGP----RYT--------------FYTQLPET-LSSVAILTDYR--VVYSMT-NGDLFLYE WD13 1172-1210 -TS----KAF--------------PLETHRSR-VACVEVSHKEQ--LVVSGSEDALLCLWD WD14 1217-1255 -KF----EMS--------------YTSSYCRG-VQCACFSKDDK--YVYVGLKDRSILVWS WD15 1287-1340 HGY----LIRENFQCLSAKASPQDPLKNFKKA-MWMVKSRQREE--LVAAAGAPQDLESES WD40 Template TGE----CLR--------------TLSGHTSG-VTSVSFSPDGK--RLVSGSEDGTIKVWD |
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