Input parameters:

  Query = ENSMUSP00000000208 (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000000208, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGNTPQLEKDVNPQTSIEPSVQVKCPGDILQGGRHAKRGRWMASWKGFHLGRRDSDCKMNITVDQDTDYAELVLSVGEI 80  
WD40-rpts                                                                                      

Query       81 TLGEKTRDSMKDSQLRRKEAKSILQAVCTLLNSGGGVVKAHIKNQNYSFTRDGMGLDLVNPLPGILHLPHDYLDFMQYND 160 
WD40-rpts                                                                                      

Query      161 YFFVFVKPWKPNQRGPGIATWKTNLYKRIFSFSVELKAADAVQFLKSRPSSHGKTVCNETLNECLSLFNRDWLAYEETFC 240 
WD40-rpts                                                                                   (__

Query      241 FTKSTHAEVKLTPKEKISPKEKILELLPQTVSAFANTDGGYLFIGLDGKTQQIIGFEAEKSDLVLLESEIEKCIQQLPVT 320 
WD40-rpts      ________________________WD 1__________________________)                         

Query      321 HFCEEKEKIKYTCKFIEVHKSGAVCAYVCAIRVEKFCCAVFAAEPESWHVEGSCVKRFTTEEWVKRQMDATAVMPGKVIC 400 
WD40-rpts                                                                                      

Query      401 SPEALCMKPFSQHEGYEQLVRTELGSLRKGTLVVSKSWALDLGLQEKQEVIWDVLHISQGSLLTLHVFVQGDENLEGNSS 480 
WD40-rpts                                                                                      

Query      481 LLGKLGAELKGYYKQIALTLKQTLVNHCGYTAKIGIIVKITYLGHKTMCLYDSSAKICYPQIYYLTTKAVKDLEKALAEI 560 
WD40-rpts                                                                                      

Query      561 LGSYESFYSLPRRNWDSFMSAFLNVGSYIVYFSRNVLTHIRI 602 
WD40-rpts                                                

1 WD40-repeats found in QUERY=ENSMUSP00000000208 (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   238-295      3.07  241.42  0.03419       20.0%     15.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  238-295    TFCFTKSTHAEVKLTPKEKISPKEKILELLPQTVSAFANTDGGYLFIGLDGKTQQIIG

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP------------------DGKRLVSGSEDGTIKVWD