Input parameters:
Query = ENSMUSP00000000904 (Len=154)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000000904, Len=154):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGH 80
WD40-rpts (_______________________WD 1_______________________) (_________________WD 2___
Query 81 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDENQPSPCWQSTGTRRGQ 154
WD40-rpts ______________) (___________________WD 3__________________)
3 WD40-repeats found in QUERY=ENSMUSP00000000904 (Len=154):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-52 7.59 428.23 0.00011 30.0% 54.88
WD 2: Seg 5 56-95 8.62 470.81 2.8e-05 32.5% 57.83
WD 3: Seg 9 99-141 5.80 354.18 0.00105 12.5% 34.30
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-52 MAALFPPPPGPRFVLRGTQS-AVN----TLHFCPPSQAAGNPLLFSGSQNGLVHIWS
WD 2 56-95 -RRI-------VTTLNGHGGQGVI----WLKTLPQGH-----QLLSQGRDLRLCLWD
WD 3 99-141 -GRN-------TIMDSVQLD-SVGFCRGSILVRGQQC-----WMLAVPGKGSDENQP
WD40 Template TGEC-------LRTLSGHTS-GVT----SVSFSPDGK-----RLVSGSEDGTIKVWD