Input parameters:

  Query = ENSMUSP00000001836 (Len=501)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000001836, Len=501):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRSRQVTCVAWVRRGVAKETPDKVELSKEEVNRLIAEAKGKLQEEGGSEEEEAGNPSEDGMQSGPTQAPPRESLEDGDP 80  
WD40-rpts                                                           (__________________________

Query       81 QDDRTLDDDELAGYDLDNYDEEDNPDAETIGESLLGLTVYGSNDQDPYVTLKDTEQYEHEDFLIKPTDNLIVCGRAEQEQ 160 
WD40-rpts      ______WD 1________________________________)  (_________________WD 2_____________

Query      161 CNLEVHVYNQEEESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKK 240 
WD40-rpts      ___)    (_______________________WD 3_______________________)                    

Query      241 KKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYD 320 
WD40-rpts          (_________________WD 4_________________)   (_________________WD 5___________

Query      321 KSVALYDCRDPSQNHRQWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCL 400 
WD40-rpts      ______)   (_________________WD 6_________________)   (_________________WD 7_____

Query      401 VTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFGGQKEGLRVWDISTVSSVNEAFGRRERLVIGGT 480 
WD40-rpts      ____________)     (_________________WD 8_________________)   (________________WD

Query      481 KGLSVSGPCGSRSPQQTPMES 501 
WD40-rpts       9_______________)   

9 WD40-repeats found in QUERY=ENSMUSP00000001836 (Len=501):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    54-123      4.04  281.49  0.00997       15.0%     15.58
  WD 2:  Seg  5   126-164      5.84  355.75  0.00100        7.5%     47.67
  WD 3:  Seg  9   169-220      6.60  387.15  0.00038       30.0%     49.03
  WD 4:  Seg 14   245-284      7.84  438.37  7.7e-05       32.5%     46.83
  WD 5:  Seg 18   288-327      8.64  471.71  2.7e-05       32.5%     55.83
  WD 6:  Seg 22   331-370      6.23  372.17  0.00060       10.0%     47.47
  WD 7:  Seg 25   374-413      8.32  458.32  4.1e-05       30.0%     54.20
  WD 8:  Seg 29   419-458      6.39  378.46  0.00049       17.5%     58.72
  WD 9:  Seg 32   462-498      4.37  295.04  0.00656        7.5%     16.24

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-123    AGNPSEDGMQSGPTQAPPRESLEDGDPQDDRTLDDD-------ELAGYDLDNYDEEDNP-D-----AE-T-IGESLLGLTVYGSN
   WD 2  126-164    -DP------------------------------YVT-------LKDTEQYEHEDFLIKP-T-----DN-L-IVCGRAEQEQCNLE
   WD 3  169-220    NQE------------------------------EESFYVHHDILLSAYPLSVEWLNFDP-SPDASTGN-Y-IAVGNMTPVIEVWD
   WD 4  245-284    -GK------------------------------KSS-------SAEGHTDAVLDLSWNK-T-----VR-NVLASASADSTVVLWD
   WD 5  288-327    -GK------------------------------SVA-------RLTAHTDKVQTLQFHPFE-----AQ-T-LISGSYDKSVALYD
   WD 6  331-370    -PS------------------------------QNH-------RQWRFSGQIERVTWNHFS-----PC-H-FLASTDDGFVYNLD
   WD 7  374-413    -DK------------------------------PIF-------TLNAHNDEISGLDLSS-Q-----IKGC-LVTASADKFVKIWD
   WD 8  419-458    -PS------------------------------LIH-------SRDMKMGVLFCSSCCP-D-----LPFV-YAFGGQKEGLRVWD
   WD 9  462-498    -VS------------------------------SVN-------EAFGRRERL--VIGGT-K-----GL-S-VSGPCGSRSPQQTP

   WD40 Template    TGE------------------------------CLR-------TLSGHTSGVTSVSFSP-D-----GK-R-LVSGSEDGTIKVWD