Input parameters:

  Query = ENSMUSP00000002765 (Len=961)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000002765, Len=961):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 SPAPVARPVPARGLSRKVWWFFSAAAGSGAAPHVRQTLGLTGAMSVPPLLRPPSPLLPAAAAVAAAAAALVPGSGPAPFP 80  
WD40-rpts                                                                                      

Query       81 APGAAPAGGISFHLQIGLSREPVLLLQDSSGDYSLAHVREMACSIVDQKFPECGFYGLYDKILLFRHDPASDNILQLVKI 160 
WD40-rpts                                                                                      

Query      161 ASDIQEGDLIEVVLSASATFEDFQIRPHALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGV 240 
WD40-rpts                                                                                      

Query      241 RRRRLSNVSLTGLGTVRTASAEFSTSVPDEPLLSPVSPGFEQKSPSESFIGREKRSNSQSYIGRPIQLDKLLMSKVKVPH 320 
WD40-rpts                                                                                      

Query      321 TFVIHSYTRPTVCQFCKKLLKGLFRQGLQCKDCRFNCHKRCAPKVPNNCLGEVTINGELLSPGAESDVVMEEGSDDNDSE 400 
WD40-rpts                                                                                      

Query      401 RNSGLMDDMDEAMVQDTEMALAEGQSGGAEMQDPDADQEDSNRTISPSTSNNIPLMRVVQSVKHTKRRSSTVMKEGWMVH 480 
WD40-rpts                                                                                      

Query      481 YTSKDTLRKRHYWRLDSKCITLFQNDTGSRYYKEIPLSEILCLEPAKPSALTPVGATPHCFEITTANVVYYVGENVVNPS 560 
WD40-rpts                                                                                      

Query      561 SSPPNNSVLPSGIGPDVARMWEVAIQHALMPVIPKGSSVGSGSNSHKDISVSISVSNCQIQENVDISTVYQIFPDEVLGS 640 
WD40-rpts                                                                                      

Query      641 GQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQESQLRNEVAILQNLHHPGVVNLECMFETPERVFVVMEKLHGDMLEMIL 720 
WD40-rpts                                                                 (____________________

Query      721 SSEKGRLPEHITKFLITQILVALRHLHFKNIVHCDLKPENVLLASADPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLA 800 
WD40-rpts      ________________WD 1___________________________________)                        

Query      801 PEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDIHDQIQNAAFMYPPNPWKEISHEAIDLINNLLQVKMRKRYSVD 880 
WD40-rpts                                                                                      

Query      881 KTLSHPWLQDYQTWLDLRELECRIGERYITHESDDSRWEQYAGEQGLQYPAHLISLSASHSDSPEAEEREMKALSERVSI 960 
WD40-rpts                                                                                      

Query      961 L 961 
WD40-rpts       

1 WD40-repeats found in QUERY=ENSMUSP00000002765 (Len=961):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   700-776      2.91  234.84  0.04177       22.5%     14.72

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  700-776    TPERVFVVMEKLHGDMLEMILSSEKGRLPEHITKFLITQILVALRHLHFKNIVHCDLKPENVLLASADPFPQVKLCD

   WD40 Template    TGECLRT----LSGH-------------T--------------------SGVTSVSFSPDGKRLVSGSEDGTIKVWD