Input parameters:

  Query = ENSMUSP00000003759 (Len=339)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000003759, Len=339):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDSLVLQSRVPAHPDSRCWFLAWNPSGTLLASCGGDRKIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80  
WD40-rpts         (__________________WD 1_________________)(____________________WD 2___________

Query       81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHP 160 
WD40-rpts      ________)     (_________________WD 3________________)      (_________________WD 

Query      161 SQELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 
WD40-rpts      4________________)     (_________________WD 5________________)                  

Query      241 WKCICTLSGFHTRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLRQAHSQDVNCVAWNPKEPGLLA 320 
WD40-rpts      (_________________WD 6_________________)                                        

Query      321 SCSDDGEVAFWEYHQPAGL 339 
WD40-rpts                         

6 WD40-repeats found in QUERY=ENSMUSP00000003759 (Len=339):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.95  443.06  6.6e-05       22.5%     56.06
  WD 2:  Seg  5    45-89       8.73  475.40  2.4e-05       35.0%     53.03
  WD 3:  Seg  9    95-133     10.09  531.48  4.3e-06       40.0%     52.99
  WD 4:  Seg 13   140-178      9.52  507.75  8.9e-06       37.5%     53.06
  WD 5:  Seg 17   184-222     10.31  540.41  3.2e-06       45.0%     51.33
  WD 6:  Seg 21   241-280      7.09  407.43  0.00020       30.0%     57.03

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     SLV-----LQSRVPA-HPDSRCWFLAWNPSGTLLASCGGDRKIRIWG
   WD 2   45-89     TEGDSWICKSVLSEG-HQ-RTVRKVAWSPCGNYLASASFDATTCIWK
   WD 3   95-133    -FE-----CVTTLEG-HE-NEVKSVAWAPSGNLLATCSRDKSVWVWE
   WD 4  140-178    -YE-----CVSVLSS-HT-QDVKHVVWHPSQELLASASYDDTVKLYQ
   WD 5  184-222    -WV-----CCATLEG-HE-STVWSIAFDPSGQRLASCSDDRTVRIWR
   WD 6  241-280    -WK-----CICTLSGFHT-RTIYDVAWCQLTGALATACGDDAIRVFE

   WD40 Template    TGE-----CLRTLSG-HT-SGVTSVSFSPDGKRLVSGSEDGTIKVWD