Input parameters:

  Query = ENSMUSP00000004222 (Len=1015)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000004222, Len=1015):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLKPTWVNHNGKPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVLQEDDEKDENIPKMLCQMDNHLACVNCVRWSN 80  
WD40-rpts      (___________________WD 1___________________)               (_________________WD 

Query       81 SGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILRSHSGDVMDVAWSPHDAWLASCSVDNTVVIWNA 160 
WD40-rpts      2________________)                      (_________________WD 3________________) 

Query      161 VKFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTLDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSA 240 
WD40-rpts         (_________________WD 4________________)(_______________________WD 5__________

Query      241 HAMNNSGPTAQIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSTKPSCPYCCCAVGSKDRSLSVWLTCLKRPL 320 
WD40-rpts      _____________)   (_________________________WD 6_________________________)    (__

Query      321 VVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQDELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPE 400 
WD40-rpts      _______________WD 7________________)   (____________________WD 8________________

Query      401 MLKYQRRQQQQQLDQKNATTRETSSASSVTGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFN 480 
WD40-rpts      ____)     (_______________WD 9______________)        (______________WD10________

Query      481 SIPLSSSLAGTMLSSPSGQQLLPLDSSTPSFGASKPCTEPVAATSARPTGESVSKDSMNATSTPAASSPSVLTTPSKIEP 560 
WD40-rpts      _____)                                                                          

Query      561 MKAFDSRFTERSKATPGAPSLTSVIPTAVERLKEQNLVKELRSRELESSSDSDEKVHLAKPSSLSKRKLELEVETVEKKK 640 
WD40-rpts                                                                                      

Query      641 KGRPRKDSRLLPMSLSVQSPAALSTEKEAMCLSAPALALKLPIPGPQRAFTLQVSSDPSMYIEVENEVTTVGGIRLSRLK 720 
WD40-rpts                                                                                      

Query      721 CNREGKEWETVLSSRVLTAAGSCDVVCVACEKRMLSVFSTCGRRLLPPILLPSPISTLHCTGPYVMALTAAATLSVWDVH 800 
WD40-rpts       (________________WD11________________)(_________________WD12________________)  

Query      801 RQVVVVKEESLHSILSGSDMTVSQILLTQHGIPVMNLSDGKAYCFNPSLSTWNLVSDKQDSLAQCADFRNSLPSQDAMLC 880 
WD40-rpts                (___________________WD13__________________)                           

Query      881 SGPLAIIQGRTSNSGRQAARLFSVPHVVQQETTLAYLENQVAAALTLQSSHEYRHWLLLYARYLVNEGFEYRLREICKDL 960 
WD40-rpts                                                                                      

Query      961 LGPVHCSTGSQWESTVVGLRKRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK 1015
WD40-rpts                                                             

13 WD40-repeats found in QUERY=ENSMUSP00000004222 (Len=1015):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       6.48  382.15  0.00044       25.0%     53.43
  WD 2:  Seg  5    60-98       7.89  440.50  7.2e-05       32.5%     53.34
  WD 3:  Seg  9   121-159      7.92  441.81  6.9e-05       32.5%     56.60
  WD 4:  Seg 13   164-202      9.23  495.80  1.3e-05       37.5%     57.89
  WD 5:  Seg 17   203-254      4.95  318.98  0.00313       35.0%     49.57
  WD 6:  Seg 21   258-313      5.94  360.03  0.00087       30.0%     56.99
  WD 7:  Seg 25   318-356      6.76  393.73  0.00031       15.0%     57.52
  WD 8:  Seg 29   360-405      3.07  241.42  0.03419       12.5%     17.58
  WD 9:  Seg 32   411-445      5.30  333.41  0.00200       12.5%     20.81
  WD10:  Seg 34   454-486      3.54  260.96  0.01879       12.5%      6.87
  WD11:  Seg 40   722-759      3.52  259.94  0.01938       17.5%     44.65
  WD12:  Seg 44   760-798      4.63  306.02  0.00467       20.0%     32.63
  WD13:  Seg 48   811-853      3.38  254.16  0.02315       17.5%     37.11

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MKLLKPTWV--------NH-------NGKPIFSVDIHPD-----------------GTKFATGGQGQD------SGKVVIWN
   WD 2   60-98     -PKMLCQMD--------NH-------LA-CVNCVRWSNS-----------------GMYLASGG---D------DKLIMVWK
   WD 3  121-159    -WRCVSILR--------SH-------SG-DVMDVAWSPH-----------------DAWLASCS---V------DNTVVIWN
   WD 4  164-202    -PEILATLR--------GH-------SG-LVKGLTWDPV-----------------GKYIASQA---D------DRSLKVWR
   WD 5  203-254    TLDWQLETSITKPFDECGG-------TT-HVLRLSWSPD-----------------GHYLVSAH---A--MNNSGPTAQIIE
   WD 6  258-313    -WKTNMDFV--------GH-------RK-AVTVVKFNPKIFKKKQKNGSSTKPSCPYCCCAVGS---K------DRSLSVWL
   WD 7  318-356    -RPLVVIHE--------LF-------DK-SIMDISWTLN-----------------GLGILVCS---M------DGSVAFLD
   WD 8  360-405    -DELGDPLS--------EEEKSRIHQST-YGKSLAIMTE-----------------AQLSTAVI---E------NPEMLKYQ
   WD 9  411-445    -----QQLD--------QK-------NA-TTRETSSASS-----------------VTGVVNGE---S------LEDIRKNL
   WD10  454-486    ------TAD--------GR-------RR--ITPLCIAQL-----------------DTGDFSTA---F------FNSIPLSS
   WD11  722-759    NREGKEWET--------VL-------SS-RVLTAAGSCD-------------------VVCVAC---E------KRMLSVFS
   WD12  760-798    T-CGRRLLP--------PI-------LL-PSPISTLHCT-----------------GPYVMALT---A------AATLSVWD
   WD13  811-853    ---LHSILS--------GS-------DM-TVSQILLTQH-----------------GIPVMNLS---DGKAYCFNPSLSTWN

   WD40 Template    TGECLRTLS--------GH-------TS-GVTSVSFSPD-----------------GKRLVSGS---E------DGTIKVWD