Input parameters:

  Query = ENSMUSP00000004646 (Len=474)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000004646, Len=474):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHT 80  
WD40-rpts                                                            (_________________________

Query       81 GPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNV 160 
WD40-rpts      WD 1________________________)          (_________________WD 2_________________) 

Query      161 GTGEALINLDDMHSDMIYNVSWSRNGSLICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRM 240 
WD40-rpts        (_________________WD 3_________________)   (___________________WD 4___________

Query      241 SERQLALWNPKNMQEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYM 320 
WD40-rpts      ________)(____________________WD 5___________________)                          

Query      321 PKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPILISLKHGYIPGKNR 400 
WD40-rpts                                                                                      

Query      401 DLKVVKKNILDSKPAANKKSELSCAPKKPTDTASVQNEAKLDEILKEIKSIKETICSQDERISKLEQQLAKMAA 474 
WD40-rpts                                                                                

5 WD40-repeats found in QUERY=ENSMUSP00000004646 (Len=474):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    55-109      7.19  411.58  0.00018       37.5%     48.25
  WD 2:  Seg 10   120-159      6.64  388.78  0.00036       30.0%     51.30
  WD 3:  Seg 14   163-202      7.48  423.67  0.00012       32.5%     55.73
  WD 4:  Seg 18   206-249      3.54  260.77  0.01889       17.5%     47.35
  WD 5:  Seg 22   250-294      4.49  300.30  0.00558       17.5%     42.99

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-109    GGAFLVLPLHKTGRIDKSYPTVC----G-HTGP--VLDIDWCPHNDQV-I-ASG---SEDCTVMVWQ
   WD 2  120-159    -T--------------EPVVILE----G-HSKR--VGIVAWHP-TARNVL-LSA---GCDNAIIIWN
   WD 3  163-202    -G--------------EALINLD----DMHSDM--IYNVSWSR-NGSL-I-CTA---SKDKKVRVID
   WD 4  206-249    -Q--------------EIVAEKE----K-AHEGARPMRAIFLA-DGNV-F-TTGFSRMSERQLALWN
   WD 5  250-294    PK--------------NMQEPIALHEMD-TSNG--VLLPFYDP-DTSI-IYLCG---KGDSSIRYFE

   WD40 Template    TG--------------ECLRTLS----G-HTSG--VTSVSFSP-DGKR-L-VSG---SEDGTIKVWD