Input parameters:

  Query = ENSMUSP00000005234 (Len=658)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000005234, Len=658):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 VGLSAAVARGAGAYGSRSRVSDRPLRARHARRRLPRCPWARPLRGSTRAQRRNKWARMPYEIKKVFASLPQVERGVSKIL 80  
WD40-rpts                                                                             (________

Query       81 GGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAG 160 
WD40-rpts      ____WD 1____________)   (_________________WD 2________________)(________________

Query      161 KIKDIAWTEDSKRIAVVGEGREKFGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKF 240 
WD40-rpts      _____WD 3_____________________)(__________________WD 4_________________)   (____

Query      241 TIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDV 320 
WD40-rpts      _____________WD 5________________)         (_______________WD 6_______________) 

Query      321 NVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHD 400 
WD40-rpts        (_________________WD 7_________________)    (__________________WD 8___________

Query      401 GHIKTGENDSFSGKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGPGGYTVVVCIGQ 480 
WD40-rpts      ______)(________________WD 9_______________)     (________________WD10__________

Query      481 IVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVYSILASTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCD 560 
WD40-rpts      _____)(_________________WD11________________)     (_________________WD12________

Query      561 ASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQDAHRLHHVSSLAWLDEH 640 
WD40-rpts      ________)(___________________WD13__________________)(___________________WD14____

Query      641 TLVTTSHDASVKEWTITY 658 
WD40-rpts      ______________)   

14 WD40-repeats found in QUERY=ENSMUSP00000005234 (Len=658):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    72-101      2.95  236.65  0.03954        5.0%     41.07
  WD 2:  Seg  5   105-143      8.58  469.29  2.9e-05       22.5%     47.48
  WD 3:  Seg  8   144-191      6.51  383.65  0.00042       20.0%     55.40
  WD 4:  Seg 12   192-232      9.24  496.47  1.3e-05       27.5%     55.33
  WD 5:  Seg 16   236-274      9.36  501.10  1.1e-05       37.5%     55.46
  WD 6:  Seg 21   284-319      8.76  476.59  2.3e-05       37.5%     43.96
  WD 7:  Seg 24   323-362      6.01  362.74  0.00080       17.5%     55.48
  WD 8:  Seg 28   367-407      7.56  426.98  0.00011       30.0%     51.63
  WD 9:  Seg 32   408-444      6.18  369.88  0.00064       25.0%     47.21
  WD10:  Seg 35   450-486      4.72  309.53  0.00419       12.5%     35.50
  WD11:  Seg 39   487-525      7.94  442.45  6.8e-05       17.5%     56.90
  WD12:  Seg 43   531-569      7.62  429.44  0.00010       22.5%     56.88
  WD13:  Seg 47   570-612      8.51  466.02  3.3e-05       25.0%     54.95
  WD14:  Seg 51   613-655      7.32  417.03  0.00015       22.5%     53.58

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-101    -------------VERGVSK-ILGGDPKG--D-HFLYTN-G----KCVILRN
   WD 2  105-143    -PA----IADIYTEHAHQVV-VAKYAPSG--F-YIASGDIS----GKLRIWD
   WD 3  144-191    TTQKEHLLKYEYQPFAGKIK-DIAWTEDS--K-RIAVVGEGREKFGAVFLWD
   WD 4  192-232    TGS----SVGEITGHNKVIN-SVDIKQTR--PYRLATGSDD----NCAAFFE
   WD 5  236-274    -FK----FKFTIGDHSRFVN-CVRFSPDG--N-RFATASAD----GQIFIYD
   WD 6  284-319    --------LGESKAHDGGIY-AISWSPDS--T-HLLSASGD----KTSKIWD
   WD 7  323-362    -NS----VVSTFPMGSNVLDQQLGCLWQK--D-HLLSISLS----GYINYLD
   WD 8  367-407    -SK----PLRVIKGHSKSIQ-CLTVHRNGGKS-YIYSGSHD----GHIKTGE
   WD 9  408-444    NDS------FSGKGHTNQVS-RMTVNESE----QLVSCSMD----DTVRYTN
   WD10  450-486    --Y----SGQGVVKLDVQPK-CVAVGPGG--Y-TVVVCI-G----QIVLLKD
   WD11  487-525    -QK----KCFSIDNPGYEPE-VVAVHPGG--D-TVAVGGTD----GNVRVYS
   WD12  531-569    -LK----DEGKLLEAKGPVT-DVAYSHDG--A-FLAVCDAS----KVVTVFS
   WD13  570-612    VAD-GYSENNVFYGHHAKIV-CLAWSPDN--E-HFASGGMD----MMVYVWT
   WD14  613-655    LSD-PETKVKIQDAHRLHHV-SSLAWLDE--H-TLVTTSHD----ASVKEWT

   WD40 Template    TGE----CLRTLSGHTSGVT-SVSFSPDG--K-RLVSGSED----GTIKVWD