Input parameters:

  Query = ENSMUSP00000005281 (Len=138)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000005281, Len=138):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 80  
WD40-rpts                   (_________________WD 1_________________)   (_________________WD 2__

Query       81 HLCSGGGDKTVVLWDVATGQVVRKFRGHAGVSTSEKTLVNVCIVEQAEAYGPDTKDAD 138 
WD40-rpts      ______________)   (_________________WD 3_________________)

3 WD40-repeats found in QUERY=ENSMUSP00000005281 (Len=138):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-53       8.84  479.86  2.1e-05       27.5%     53.69
  WD 2:  Seg  5    57-95      10.19  535.74  3.7e-06       42.5%     56.54
  WD 3:  Seg  9    99-138      4.10  284.06  0.00921       22.5%     31.33

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-53     PQKRMKTLDCSQGAVRA------VRFNVDGNYCLTCGSDKTLKLWN
   WD 2   57-95     -GTLLRTYSGHGYEVLD------AAGSFDNSHLCSGGGDKTVVLWD
   WD 3   99-138    -GQVVRKFRGHAGVSTSEKTLVNVCIVEQAEAYGPDTKDA-----D

   WD40 Template    TGECLRTLSGHTSGVTS------VSFSPDGKRLVSGSEDGTIKVWD