Input parameters:
Query = ENSMUSP00000005508 (Len=153)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000005508, Len=153):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MELPQMPELMGLSLLVGLLALVATAAVARGWLRAEEKPSQPVCQKENEPKKSGSKKQKQNQRVRKEKPQQHSFTHPLLAA 80
WD40-rpts (____
Query 81 ALKSHSGNISCMDFSSNGKYLATCADDRTVRIWSTKDFLQREHRSMRANVELDHATLVRFSPDCREVHHDGLQ 153
WD40-rpts _____________WD 1________________)
1 WD40-repeats found in QUERY=ENSMUSP00000005508 (Len=153):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 76-114 9.26 497.24 1.2e-05 25.0% 42.85
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 76-114 PLLAAALKSHSGNISCMDFSSNGKYLATCADDRTVRIWS
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD