Input parameters:

  Query = ENSMUSP00000005825 (Len=1200)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000005825, Len=1200):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEGVYSELHSVVAEVGVPVSVSH 80  
WD40-rpts                         (_________________WD 1_________________)                     

Query       81 FDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGGDDIRQIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHS 160 
WD40-rpts                                                                    (_________________

Query      161 VLLTDNSTLLVGGLQNHVLEIDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRSFKVEHEFDAFSGSLS 240 
WD40-rpts      _WD 2_________________)  (________________WD 3_______________)   (______________

Query      241 DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANP 320 
WD40-rpts      ______WD 4____________________)                                                (

Query      321 ADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPV 400 
WD40-rpts      _________________WD 5________________)                                          

Query      401 PLTTDALLSDWPAANSAPAPRRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNFSQVTESPTGREE 480 
WD40-rpts                                                                                      

Query      481 EPLHTVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACELG 560 
WD40-rpts                                                                                      

Query      561 FLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEASGKGSLARLIQRWNRFILTQLHQDMQELEVPQAYRGAG 640 
WD40-rpts                                                                                      

Query      641 GSFCSSGDSIIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPEDKTGKNYDFAQVLKRSICLEQNTQAWCDNCEKYQ 720 
WD40-rpts                                                                                      

Query      721 PTIQTRNIRHLPDILVINCEVNSSKEADFWRLQAEVAFKIAVKKYGGEMKSKEFALADRKELRSPEGFLCSSIEELKNVW 800 
WD40-rpts                                                                                      

Query      801 LPFSIRMKMTKNKGLDVCNWADEHELSSLGAPSQWGPARAEEELGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQR 880 
WD40-rpts                                                                                      

Query      881 KEGVTHQQWYLFNDFLIEPIDKYEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFI 960 
WD40-rpts                                                                                      

Query      961 PLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQ 1040
WD40-rpts                                                                                      

Query     1041 YSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLA 1120
WD40-rpts                                                                                      

Query     1121 WYFLDLKIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPESQTSPKNAAVFSVLAL 1200
WD40-rpts                                                                                      

5 WD40-repeats found in QUERY=ENSMUSP00000005825 (Len=1200):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    20-59       3.32  251.61  0.02503       15.0%     11.35
  WD 2:  Seg 10   143-183      3.14  244.22  0.03138       17.5%     46.46
  WD 3:  Seg 14   186-222      3.09  242.41  0.03318       17.5%     50.88
  WD 4:  Seg 18   226-271      3.31  251.55  0.02508       15.0%     33.39
  WD 5:  Seg 25   320-358      4.11  284.47  0.00910       12.5%     46.81

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-59     TLDPV-LDAHLNPSLLQNVELDPE-------GVALEALPVQESVHIME
   WD 2  143-183    GGLIIFDYLLDENEDMHSVLLTDN-------STLLVGGLQNHVLEIDL
   WD 3  186-222    -VQET-QKYAVETPGVTIM--RQT-------NRFFFCGHTSGKVSLRD
   WD 4  226-271    -FKVE-HEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYD
   WD 5  320-358    -PADI-FHVNPVGPLLMTFDVSAS-------KQALAFGDSEGCVHLWT

   WD40 Template    TGECL-RTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD