Input parameters:

  Query = ENSMUSP00000006301 (Len=648)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000006301, Len=648):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPLTPQLLLQRGRPKTDKLGKIQSLNLSGLQLLSEHLDPNLLGRLKKLRELDLSNNLLETLPANLGLSHLRILRCTNNQ 80  
WD40-rpts                                                                                      

Query       81 LGDVTALHQFPELEELNLEGNPFLTVSDNLKVSFLLPKLRKVNGKDTASTCSQVENLDRELMDRVTAHWQKFIATVSPEE 160 
WD40-rpts                                                                                      

Query      161 ETDKVRADFMRSAVRDVCYGPESLIEFTQWRVRMIAEELVASGGAQVQDAKVPVEHPQAAGASKFRAREVASKRPGKDPV 240 
WD40-rpts                    (__________________________WD 1_________________________)    (____

Query      241 TLPPSKRVRALPPAQAEGSPMGADGGQAALHLEPLHFLQCHSRNNSPKDLETQLWACAFEPAREEGHSRATSQTVATCGG 320 
WD40-rpts      _____________WD 2________________)   (__________________WD 3__________________) 

Query      321 EAVCVIDCQTGLVLHKYKVPGEEFFSVAWTALTVVTQAGHKKRWNMLAAAGLRGMVRLLHVRAGFCCSVIRAHKKAIATL 400 
WD40-rpts                           (_________________WD 4________________)   (________________

Query      401 CFSPSHETHLFTASYDKRIILWDIGVPNQDYKFQASQLLTLNCGSVPLRLCPVATCPDDFLLAGCEGGCYCWDVRLDQPQ 480 
WD40-rpts      _WD 5_________________)          (_________________WD 6_________________)       

Query      481 KQRVCEVNFIFSEDSKVSGQRVDGLAFVNEDVVASKGSGQGTIYLWSWSQTWAGRGRQSVLPVVILVRLQWSPTNLAYFS 560 
WD40-rpts           (__________________WD 7__________________)                       (_________

Query      561 LSTCPGKNLVLCGDEEGSVWIYDVEHLLKEPPQATTLQPPTQILKWPQPTALGQPVTKTMINTVVANAAFTYLTALTDSN 640 
WD40-rpts      _____WD 8_____________)(_____________________________WD 9_______________________

Query      641 IVSIWRRC 648 
WD40-rpts      _____)  

9 WD40-repeats found in QUERY=ENSMUSP00000006301 (Len=648):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   175-231      4.07  282.84  0.00957        5.0%     10.50
  WD 2:  Seg  4   236-274      6.37  377.84  0.00050       10.0%      0.59
  WD 3:  Seg  6   278-319      4.61  305.01  0.00482       12.5%     29.71
  WD 4:  Seg 11   342-380      5.32  334.37  0.00194       12.5%     41.82
  WD 5:  Seg 15   384-423      8.60  470.07  2.9e-05       30.0%     51.32
  WD 6:  Seg 20   434-473      5.04  322.94  0.00276       25.0%     44.89
  WD 7:  Seg 25   486-527      7.16  410.36  0.00018       20.0%     44.11
  WD 8:  Seg 30   551-583      7.09  407.48  0.00020       20.0%     47.46
  WD 9:  Seg 33   584-646      5.11  325.95  0.00252       10.0%     38.81

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  175-231    -RDVC--YG-----------------------PE--SLIEFTQWRVRMIAEELVASG---GAQVQDAKVPVEH-PQAAGASKFRAREVA
   WD 2  236-274    -GKDP--VT-----------------------LP--PS------------------K---RVRALPPAQAEGS-PMGADGGQAALHLEP
   WD 3  278-319    -LQCH--SR-----------------------NN--SP------------------KDLETQLWACAFEPARE-EGHSRATSQTVATCG
   WD 4  342-380    -EEFF--SV-----------------------AW--TA------------------L---TVVTQAGHKKRWN-MLAAAGLRGMVRLLH
   WD 5  384-423    -GFCC--SV-----------------------IR--AH------------------K---KAIATLCFSPSHETHLFTASYDKRIILWD
   WD 6  434-473    QASQL--LT-----------------------LNCGSV------------------P---LRLCPVATCPDDF-LLAGC--EGGCYCWD
   WD 7  486-527    EVNFIFSED-----------------------SK--VS------------------G---QRVDGLAFVNEDV-VASKGSGQGTIYLWS
   WD 8  551-583    --------------------------------WS--PT------------------N---LAYFSLSTCPGKN-LVLCGDEEGSVWIYD
   WD 9  584-646    VEHLL--KEPPQATTLQPPTQILKWPQPTALGQP--VT------------------K---TMINTVVANAAFT-YLTALTDSNIVSIWR

   WD40 Template    TGECL--RT-----------------------LS--GH------------------T---SGVTSVSFSPDGK-RLVSGSEDGTIKVWD