WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000006444 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000006444 (Len=2629) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000006444, Len=2629): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEKLCGHVPGHSDILSLKNRCLTMLPDLQPLEKIHGHRSVHSDILSLENQCLTMLSDLQPTERIDGHISVHPDILSLENR 80
WD40-rpts
Query 81 CLTMLPDLQPLEKLCGHMSSHPDVLSLENQCLATLPTVKSTALTSPLLQGLHISHTAQADLHSLKTSNCLLPELPTKKTP 160
WD40-rpts
Query 161 CFSEELDLPPGPRALKSMSATAQVQEVALGQWCVSKEKEFQEEESTEVPMPLYSLSLEEEEVEAPVLKLTSGDSGFHPET 240
WD40-rpts
Query 241 TDQVLQEKKMALLTLLCSALASNVNVKDASDLTRASILEVCSALASLEPEFILKASLYARQQLNLRDIANTVLAVAALLP 320
WD40-rpts
Query 321 ACRPHVRRYYSAIVHLPSDWIQVAEFYQSLAEGDEKKLVSLPACLRAAMTDKFAEFDEYQLAKYNPRKHRSKRRSRQPPR 400
WD40-rpts
Query 401 PQKTERPFSERGKCFPKSLWPLKNEQITFEAAYNAMPEKNRLPRFTLKKLVEYLHIHKPAQHVQALLGYRYPATLELFSR 480
WD40-rpts
Query 481 SHLPGPWESSRAGQRMKLRRPETWERELSLRGNKASVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELVLQRLQHEK 560
WD40-rpts
Query 561 SVVHSRQFPFRFLNAHDSIDKLEAQLRSKASPFPSNTTLMKRIMIRNSKKNRRPASRKHLCTLTRRQLRAAMTIPVMYEQ 640
WD40-rpts
Query 641 LKREKLRLHKARQWNCDVELLERYRQALETAVNLSVKHNLSPMPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIGM 720
WD40-rpts
Query 721 MVARAEQVTVCLCGGGFVKTPVLTADEGILKTAIKLQAQVQELEGNDEWPLDTFGKYLLSLAVQRTPIDRVILFGQRMDT 800
WD40-rpts
Query 801 ELLKVAKQIIWQHVNSKCLFVGVLLQKTQYISPNLNPNDVTLSGCTDGILKFIAEHGASRLLEHVGQLDKLFKIPPPPGK 880
WD40-rpts
Query 881 TQAPSLRPLEENIPGPLGPISQHGWRNIRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGITEEETR 960
WD40-rpts
Query 961 RNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWTHEYPSGRSVTEMEVMQFLNRGQRSQPSAQALIYFRD 1040
WD40-rpts
Query 1041 PDFLSSVPDAWKPDFISESEEAAHRVSELKRYLHEQKEVTCRSYSCEWGGVAAGRPYTGGLEEFGQLVLQDVWSMIQKQH 1120
WD40-rpts
Query 1121 LQPGAQLEQPTSISEDDLIQTSFQQLKTPTSPARPRLLQDTVQQLLLPHGRLSLVTGQAGQGKTAFLASLVSALKVPDQP 1200
WD40-rpts
Query 1201 NEPPFVFFHFAAARPDQCLALNLLRRLCTHLRQKLGELSALPSTYRGLVWELQQKLLLKFAQSLQPAQTLVLIIDGADKL 1280
WD40-rpts
Query 1281 VDRNGQLISDWIPKSLPRRVHLVLSVSSDSGLGETLQQSQGAYVVALGSLVPSSRAQLVREELALYGKRLEESPFNNQMR 1360
WD40-rpts
Query 1361 LLLAKQGSSLPLYLHLVTDYLRLFTLYEQVSERLRTLPATLPLLLQHILSTLEQEHGHDVLPQALTALEVTRSGLTVDQL 1440
WD40-rpts
Query 1441 HAILSTWLILPKETKSWEEVLAASHSGNPFPLCPFAYLVQSLRSLLGEGPVERPGARLCLSDGPLRTTIKRRYGKRLGLE 1520
WD40-rpts
Query 1521 KTAHVLIAAHLWKTCDPDASGTFRSCPPEALKDLPYHLLQSGNHGLLAEFLTNLHVVAAYLEVGLVPDLLEAHVLYASSK 1600
WD40-rpts
Query 1601 PEANQKLPAADVAVFHTFLRQQASLLTQYPLLLLQQAASQPEESPVCCQAPLLTQRWHDQFTLKWINKPQTLKGQQSLSL 1680
WD40-rpts (_______________
Query 1681 TMSSSPTAVAFSPNGQRAAVGTASGTIYLLNLKTWQEEKAVVSGCDGISSFAFLSDTALFLTTFDGHLELWDLQHGCWVF 1760
WD40-rpts ______WD 1____________________) (________________WD 2________________) (____
Query 1761 QTKAHQYQITGCCLSPDRRLLATVCLGGYLKLWDTVRGQLAFQYTHPKSLNCVAFHPEGQVVATGSWAGSITFFQADGLK 1840
WD40-rpts _____________WD 3________________)(__________________WD 4_________________) (_
Query 1841 VTKELGAPGPSVCSLAFNKPGKIVAVGRIDGTVELWAWQEGARLAAFPAQCGCVSAVLFLHAGDRFLTAGEDGKAQLWSG 1920
WD40-rpts ________________WD 5________________) (_________________WD 6________________)
Query 1921 FLGRPRGCLGSLPLSPALSVALNPDGDQVAVGYREDGINIYKISSGSQGPQHQELNVAVSALVWLSPSVLVSGAEDGSLH 2000
WD40-rpts (_________________WD 7_________________) (________________WD 8______________
Query 2001 GWMFKGDSLHSLWLLSRYQKPVLGLAASRELMAAASEDFTVRLWPRQLLTQPHVHAVELPCCAELRGHEGPVCCCSFSPD 2080
WD40-rpts __) (_________________WD 9________________) (_________________WD10
Query 2081 GGILATAGRDRNLLCWDMKIAQAPLLIHTFSSCHRDWITGCAWTKDNILVSCSSDGSVGLWNPEAGQQLGQFSGHQSAVS 2160
WD40-rpts ________________) (_______________WD11______________) (______________
Query 2161 AVVAVEEHIVSVSRDGTLKVWDHQGVELTSIPAHSGPISQCAAALEPRPGGQPGSELLVVTVGLDGATKLWHPLLVCQIR 2240
WD40-rpts __WD12_______________) (_____________________WD13_____________________) (____
Query 2241 TLQGHSGPVTAAAASEASGLLLTSDDSSVQLWQIPKEADDSYKPRSSVAITAVAWAPDGSMVVSGNEAGELTLWQQAKAV 2320
WD40-rpts ____________WD14________________) (_________________WD15________________)(____
Query 2321 ATAQAPGRVSHLIWYSANSFFVLSANENVSEWQVGLRKGSTSTSSSLHLKRVLQEDWGVLTGLGLAPDGQSLILMKEDVE 2400
WD40-rpts _____________WD16_________________)(______________________WD17__________________
Query 2401 LLEMKPGSIPSSICRRYGVHSSILCTSKEYGLFYLQQGDSGLLSILEQKESGEFEEILDFNLNLNNPNGSPVSITQAKPE 2480
WD40-rpts ____)(__________________WD18__________________)
Query 2481 SESSLLCATSDGMLWNLSECTSEGEWIVDNIWQKKAKKPKTQTLETELSPHSELDFSIDCWIDPTNLKAQQCKKIHLGSV 2560
WD40-rpts (_________________
Query 2561 TALHVLPGLLVTASKDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDTQGNLYFLSWE 2629
WD40-rpts _WD19_________________)
 19 WD40-repeats found in QUERY=ENSMUSP00000006444 (Len=2629): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 21 1665-1711 5.77 353.19 0.00108 37.5% 43.91 WD 2: Seg 24 1715-1752 5.23 330.64 0.00218 20.0% 55.25 WD 3: Seg 28 1756-1794 7.59 428.08 0.00011 27.5% 59.06 WD 4: Seg 32 1795-1835 6.90 399.50 0.00026 27.5% 57.77 WD 5: Seg 36 1839-1877 7.75 434.80 8.6e-05 27.5% 57.91 WD 6: Seg 40 1881-1919 8.18 452.46 5.0e-05 27.5% 55.51 WD 7: Seg 44 1923-1962 6.18 369.84 0.00065 25.0% 56.80 WD 8: Seg 48 1966-2003 5.26 331.79 0.00210 25.0% 48.37 WD 9: Seg 51 2007-2045 6.25 372.81 0.00059 12.5% 53.57 WD10: Seg 55 2059-2097 8.03 446.33 6.0e-05 37.5% 47.35 WD11: Seg 59 2108-2142 5.84 355.71 0.00100 27.5% 44.28 WD12: Seg 62 2146-2182 7.69 432.16 9.3e-05 45.0% 51.13 WD13: Seg 66 2185-2232 5.59 345.41 0.00138 20.0% 56.36 WD14: Seg 70 2236-2273 6.99 403.40 0.00023 30.0% 54.72 WD15: Seg 73 2277-2315 6.95 401.90 0.00024 27.5% 51.12 WD16: Seg 77 2316-2355 3.79 271.41 0.01361 10.0% 42.98 WD17: Seg 81 2356-2405 4.50 300.52 0.00554 22.5% 41.92 WD18: Seg 85 2406-2447 4.03 281.10 0.01010 10.0% 47.27 WD19: Seg 97 2543-2583 5.67 348.71 0.00124 27.5% 47.29Multiple sequence alignment of 19 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1665-1711 WIN----------KPQT---LKGQQSLSLTM-SSSPTAV--AFSPNGQ---------RAAVGTASGTIYLLN WD 2 1715-1752 -WQ----------EEKA---VVS-------G-CDGISSF--AFLSDTA---------LFLT-TFDGHLELWD WD 3 1756-1794 -GC----------WVFQ---TKA-------H-QYQITGC--CLSPDRR---------LLATVCLGGYLKLWD WD 4 1795-1835 TVR---------GQLAF---QYT-------H-PKSLNCV--AFHPEGQ---------VVATGSWAGSITFFQ WD 5 1839-1877 -LK----------VTKE---LGA-------P-GPSVCSL--AFNKPGK---------IVAVGRIDGTVELWA WD 6 1881-1919 -GA----------RLAA---FPA-------Q-CGCVSAV--LFLHAGD---------RFLTAGEDGKAQLWS WD 7 1923-1962 -GR----------PRGC---LGS-------LPLSPALSV--ALNPDGD---------QVAVGYREDGINIYK WD 8 1966-2003 -GS----------QGPQ---HQE-------L-NVAVSAL--VW-LSPS---------VLVSGAEDGSLHGWM WD 9 2007-2045 -DS----------LHSL---WLL-------S-RYQKPVL--GLAASRE---------LMAAASEDFTVRLWP WD10 2059-2097 -LP----------CCAE---LRG-------H-EGPVCCC--SFSPDGG---------ILATAGRDRNLLCWD WD11 2108-2142 --------------HTF---SSC-------H-RDWITGC--AWTKDN----------ILVSCSSDGSVGLWN WD12 2146-2182 -GQ----------QLGQ---FSG-------H-QSAVSAV--VAVEEH-----------IVSVSRDGTLKVWD WD13 2185-2232 -GV----------ELTS---IPA-------H-SGPISQC--AAALEPRPGGQPGSELLVVTVGLDGATKLWH WD14 2236-2273 -VC----------QIRT---LQG-------H-SGPVTAA--AASEAS----------GLLLTSDDSSVQLWQ WD15 2277-2315 -EA----------DDSY---KPR-------S-SVAITAV--AWAPDGS---------MVVSGNEAGELTLWQ WD16 2316-2355 QAK----------AVAT---AQA-------P-GRVSHLI--WYSANSF---------FVLSANENVSEWQVG WD17 2356-2405 LRKGSTSTSSSLHLKRV---LQE-------D-WGVLTGL--GLAPDGQ---------SLILMKEDVELLEMK WD18 2406-2447 PGS----------IPSS---ICR-------R-YGVHSSILCTSKEYGL---------FYLQQGDSGLLSILE WD19 2543-2583 DPT----------NLKAQQCKKI-------H-LGSVTAL--HVLPG-----------LLVTASKDRDVKLWE WD40 Template TGE----------CLRT---LSG-------H-TSGVTSV--SFSPDGK---------RLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |