Input parameters:

  Query = ENSMUSP00000006462 (Len=435)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000006462, Len=435):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESESESGAAADTPPLETLSFHGDEEIIEVVELDPGPPDPDDLAQEMEDVDFEEEEEEEEGNDEGWVLEPQEGVVGSMEG 80  
WD40-rpts      (_____________WD 1_____________)(_________________WD 2_________________)        

Query       81 PDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLGDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLK 160 
WD40-rpts       (_________________WD 3_________________)   (_________________WD 4______________

Query      161 VWQVDTKEEVWSFEAGDLEWMEWHPRAPVLLAGTADGNTWMWKVPNGDCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 240 
WD40-rpts      __)(_________________WD 5_________________)  (_________________WD 6_____________

Query      241 RIWDLKQGNPIHVLKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEESESNS 320 
WD40-rpts      ___)(____________________WD 7___________________)          (____________________

Query      321 VESLGFCSVMPLAAVGYLDGTLAIYDLSTQTLRHQCQHQSGIVQLLWEAGTAVVYTCSLDGVVRLWDARTGRLLTDYRGH 400 
WD40-rpts      _WD 8____________________)  (_________________WD 9________________)   (_________

Query      401 TAEILDFALSKDASLVVTTSGDHKAKVFCVQRPDR 435 
WD40-rpts      ________WD10________________)      

10 WD40-repeats found in QUERY=ENSMUSP00000006462 (Len=435):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       5.58  345.30  0.00138       12.5%     41.43
  WD 2:  Seg  4    33-72       7.74  434.30  8.7e-05        7.5%      4.51
  WD 3:  Seg  7    82-121      7.74  434.45  8.7e-05       30.0%     48.83
  WD 4:  Seg 11   125-163      9.97  526.36  5.0e-06       37.5%     54.05
  WD 5:  Seg 15   164-203      8.52  466.78  3.2e-05       17.5%     53.35
  WD 6:  Seg 19   206-244      9.74  516.94  6.7e-06       42.5%     54.97
  WD 7:  Seg 23   245-289      8.27  456.42  4.4e-05       27.5%     46.82
  WD 8:  Seg 28   300-346      7.81  437.39  7.9e-05       22.5%     46.54
  WD 9:  Seg 31   349-387      8.74  475.67  2.4e-05       25.0%     54.24
  WD10:  Seg 35   391-429      9.17  493.51  1.4e-05       30.0%     54.98

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     --------------------MESESESGAAADTPPLETLS-FHGDEEIIEVVE
   WD 2   33-72     LDP-----GPPD-------PDDLAQEMEDVDFEEEEEEEE-GNDEGWVLEPQE
   WD 3   82-121    -DD-----SEVT-------FALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWR
   WD 4  125-163    -GE-----LLFE-------CAGHKDSVTCAGFSHDSTLVA-TGDMSGLLKVWQ
   WD 5  164-203    VDT-----KEEV-------WSFEAGDLEWMEWHPRAPVLL-AGTADGNTWMWK
   WD 6  206-244    -NG-----DCKT-------FQGPNCPATCGRVLPDGKRAV-VGYEDGTIRIWD
   WD 7  245-289    LKQGNPIHVLKG-------TEGHQGPLTCVATNQDGSLIL-TGSVDCQAKLVS
   WD 8  300-346    RPE-----TVASQPSLGEGEESESNSVESLGFCSVMPLAA-VGYLDGTLAIYD
   WD 9  349-387    -TQ-----TLRH-------QCQHQSGIVQLLWEAGTAVVY-TCSLDGVVRLWD
   WD10  391-429    -GR-----LLTD-------YRGHTAEILDFALSKDASLVV-TTSGDHKAKVFC

   WD40 Template    TGE-----CLRT-------LSGHTSGVTSVSFSPDGKRLV-SGSEDGTIKVWD