Input parameters:
Query = ENSMUSP00000006565 (Len=499)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000006565, Len=499):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQFVFESDLHSLLQLDAPIPNAPVARWQRKAKEATGPAPSPMRAANRSHSAGRTPGRTPGKSSSKVQTTPSKPGGDRFI 80
WD40-rpts
Query 81 PQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSLNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGS 160
WD40-rpts
Query 161 SRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAWIKEGNY 240
WD40-rpts (_______________WD 1_______________)(___________________WD 2______
Query 241 LAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 320
WD40-rpts _____________) (________________WD 3_______________) (_________________WD 4
Query 321 GRHLASGGNDNIVNVWPSGPGESGWAPLQTFTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHS 400
WD40-rpts ________________) (________________WD 5_______________) (__________
Query 401 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWRCFEMDPALR 480
WD40-rpts _______WD 6_________________) (_________________WD 7________________)
Query 481 REREKASVAKSSLIHQGIR 499
WD40-rpts
7 WD40-repeats found in QUERY=ENSMUSP00000006565 (Len=499):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 175-210 4.39 296.13 0.00634 12.5% 43.33
WD 2: Seg 7 211-254 7.87 439.85 7.3e-05 22.5% 58.23
WD 3: Seg 11 258-294 6.84 397.22 0.00028 32.5% 54.82
WD 4: Seg 15 299-337 9.62 511.88 7.8e-06 37.5% 49.22
WD 5: Seg 19 350-386 5.91 358.84 0.00091 22.5% 37.38
WD 6: Seg 22 390-429 6.09 366.30 0.00072 35.0% 52.03
WD 7: Seg 26 433-471 9.51 507.50 9.0e-06 32.5% 55.03
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 175-210 -------ILDAPEIRNDYYLNLVDWSSGNVLA---VAL---DNSVYLWN
WD 2 211-254 AGSGDILQLLQMEQPGDYISSVAWIKEGNYLA---VGTS--NAEVQLWD
WD 3 258-294 -QK----RLRNMTSHSARVSSLSW--NSYILS---SGSR--SGHIHHHD
WD 4 299-337 -EH----HVATLSGHSQEVCGLRWAPDGRHLA---SGGN--DNIVNVWP
WD 5 350-386 ----------TFTQHQGAVKAVAWCPWQSNILATGGGTS--DRHIRIWN
WD 6 390-429 -GA----CLSAVDVH-SQVCSILWSPHYKELI---SGHGFAQNQLVIWK
WD 7 433-471 -MA----KVAELKGHTARVLGLTMSPDGATVA---SAAA--DETLRLWR
WD40 Template TGE----CLRTLSGHTSGVTSVSFSPDGKRLV---SGSE--DGTIKVWD