Input parameters:

  Query = ENSMUSP00000006742 (Len=1462)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000006742, Len=1462):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPRKNLASVGTMPEQERQVTAKEASRKILSKLALPGRPWEQSMKQSFAFDNVGYEGGLDSTSSSPAATDVVNILGMTCH 80  
WD40-rpts                                                                                      

Query       81 SCVKSIEDRISSLKGIVNIKVSLEQGSATVRYVPSVMNLQQICLQIEDMGFEASAAEGKAASWPSRSSPAQEAVVKLRVE 160 
WD40-rpts                                                                                      

Query      161 GMTCQSCVSSIEGKIRKLQGVVRIKVSLSNQEAVITYQPYLIQPEDLRDHICDMGFEAAIKNRTAPLRLGPIDVNKLEST 240 
WD40-rpts                                                                                      

Query      241 NLKKETVSPVQISNHFETLGHQGSYLATLPLRIDGMHCKSCVLNIEGNIGQLPGVQNIHVSLENKTAQIQYDPSCVTPMF 320 
WD40-rpts                                                                                      

Query      321 LQTAIEALPPGHFKVSLPDGVEENEPQSGSSQRHQEQGPGRTAVLTISGITCASSVQPIEDMLSQRKGVQQTSISLAEGT 400 
WD40-rpts                                                                                      

Query      401 GAVLYDPSIVSLDELRTAVEDMGFEVSVNSETFTINPVRNFKSGNSVPQTMGDIAGSVQKMAPDTRGLPTHQGPGHSSET 480 
WD40-rpts                                                                                      

Query      481 PSSPGATASQKCFVQIKGMTCASCVSNIERSLQRHAGILSVLVALMSGKAEVKYDPEIIQSPRIAQLIQDLGFEASVMED 560 
WD40-rpts                                                                                      

Query      561 NTVSEGDIELIITGMTCASCVHNIESKLTRTNGITYASVALATSKAHVKFDPEIVGPRDIIKIIEEIGFHASLAQRNPNA 640 
WD40-rpts                                                                                      

Query      641 HHLDHKTEIKQWKKSFLCSLVFGIPVMGLMVYMLIPSSTPQETMVLDHNIIPGLSVLNLIFFILCTFVQFLGGWYFYVQA 720 
WD40-rpts                                                                                      

Query      721 YKSLRHRSANMDVLIVLATTIAYAYSLVILVVAVAEKAEKSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSL 800 
WD40-rpts                                                                                      

Query      801 QATEATVVTLGEDNLILREEQVPMELVQRGDVIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSIVIAGSIN 880 
WD40-rpts                                                                                      

Query      881 AHGSVLLKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIVIGFVDFGVVQKYFPSPS 960 
WD40-rpts                                                                                      

Query      961 KHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGVLIKGGKPLEMAHKIKTVMFDKTGTITHGVPR 1040
WD40-rpts                                                                                      

Query     1041 VMRFLLLADVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYSTDFQAVPGCGISCKVSNVEGILARSDL 1120
WD40-rpts                                                                                      

Query     1121 TAHPVGVGNPPTGEGAGPQTFSVLIGNREWMRRNGLTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAA 1200
WD40-rpts                                                                                      

Query     1201 LAIYTLKSMGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIA 1280
WD40-rpts              (___________________________________________WD 1________________________

Query     1281 IGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMPIGIVLQPWMGSAAMAASS 1360
WD40-rpts      ___________________)                                                            

Query     1361 VSVVLSSLQLKCYRKPDLERYEAQAHGRMKPLSASQVSVHIGMDDRRRDSPRATAWDQVSYVSQVSLSSLTSDRLSRHGG 1440
WD40-rpts                                                                                      

Query     1441 AAEDGGDKWSLLLSDRDEEQCI 1462
WD40-rpts                            

1 WD40-repeats found in QUERY=ENSMUSP00000006742 (Len=1462):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 34  1209-1300     4.52  301.28  0.00541       22.5%     18.71

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1209-1300   MGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRND

   WD40 Template    TGECLRTLSGHT-----------------SGVTS----------------VSFSPDGKR-----------LVSG--------SEDGTIKVWD