Input parameters:

  Query = ENSMUSP00000008004 (Len=480)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000008004, Len=480):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTR 80  
WD40-rpts                                           (__________________________________________

Query       81 ELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ 160 
WD40-rpts      WD 1__________________________________________)                                 

Query      161 GCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 240 
WD40-rpts                                                                                      

Query      241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVV 320 
WD40-rpts                                                                                      

Query      321 INHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLE 400 
WD40-rpts                                                                                      

Query      401 ASHFDEKKEINKRKQMILEGKDPDLEAKRKAELAKIKQQNRRFKEKVGQTLRRQKAGSTVRRSRPPRSRPQEPAQAEAQD 480 
WD40-rpts                                                                                      

1 WD40-repeats found in QUERY=ENSMUSP00000008004 (Len=480):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    38-127      3.05  240.75  0.03490       15.0%     37.59

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-127    EGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIAT

   WD40 Template    TGECLRTLSGHTS-------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD