Input parameters:

  Query = ENSMUSP00000008893 (Len=484)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000008893, Len=484):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFRKVVRQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFMVLPLNKTGRIDKAYPTVCG 80  
WD40-rpts                                                             (________________________

Query       81 HTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEGHTKRVGIITWHPTARNVLLSAGCDNVVLIW 160 
WD40-rpts      _WD 1_________________________)          (_________________WD 2_________________

Query      161 NVGTAEELYRLDSLHPDLIYNVSWNHNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFS 240 
WD40-rpts      )(___________________WD 3__________________)   (___________________WD 4_________

Query      241 RMSERQLALWDPENLEEPMALQELDSSNGALLPFYDPDTSVVYVCGKGDSSIRYFEITDEPPYIHFLNTFTSKEPQRGMG 320 
WD40-rpts      __________)(____________________WD 5___________________)                        

Query      321 SMPKRGLEVSKCEIARFYKLHERKCEPIVMTVPRKSDLFQDDLYPDTAGPEAALEAEDWVSGQDANPILISLREAYVPSK 400 
WD40-rpts                                                                                      

Query      401 QRDLKVSRRNVLSDSRPASYSRSGASTATAVTDVPSGNLAGAGEAGKLEEVMQELRALRMLVKEQGERISRLEEQLGRME 480 
WD40-rpts                                                                                      

Query      481 NGDT 484 
WD40-rpts          

5 WD40-repeats found in QUERY=ENSMUSP00000008893 (Len=484):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    56-111      7.21  412.43  0.00017       37.5%     48.28
  WD 2:  Seg 10   122-161      6.82  396.40  0.00028       27.5%     51.48
  WD 3:  Seg 14   162-204      7.60  428.53  0.00010       27.5%     54.23
  WD 4:  Seg 18   208-251      3.99  279.64  0.01056       22.5%     46.25
  WD 5:  Seg 22   252-296      4.55  302.78  0.00516       17.5%     39.79

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-111    GGGAFMVLPLNKTGRIDKAYPTVC----GHTGP--VLDIDWCPHNDEV-I-ASG---SEDCTVMVWQ
   WD 2  122-161    -T---------------EPVVVLE----GHTKR--VGIITWHP-TARNVL-LSA---GCDNVVLIWN
   WD 3  162-204    VG------------TAEELYRLDS----LHPDL--IYNVSWNH-NGSL-F-CSA---CKDKSVRIID
   WD 4  208-251    -G---------------TLVAERE----KAHEGARPMRAIFLA-DGKV-F-TTGFSRMSERQLALWD
   WD 5  252-296    PE---------------NLEEPMALQELDSSNG--ALLPFYDP-DTSV-VYVCG---KGDSSIRYFE

   WD40 Template    TG---------------ECLRTLS----GHTSG--VTSVSFSP-DGKR-L-VSG---SEDGTIKVWD