Input parameters:

  Query = ENSMUSP00000010278 (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000010278, Len=342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKDTPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGSLLLGVSSLSGRCWVGSLWFFKDPSAAPNEGFCSAGVQTE 80  
WD40-rpts                       (___________________WD 1__________________)         (__________

Query       81 AGVADLTWVGDKGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVTVLSSGTQAVSGSKDCCIKIWDLAQQVSL 160 
WD40-rpts      ______WD 2________________)         (________________WD 3_______________)   (___

Query      161 NSYRAHAGQVTCVAASPHKDSVFLSCSEDSRILLWDTRCPKPASQMACNASGYLPTALAWHPQQSEVFVFGDENGSVSLV 240 
WD40-rpts      ______________WD 4_________________)   (__________________WD 5__________________

Query      241 DTKNASCTLSSAVHSQGVTRLVFSPHSVPLLTSLSEDCSLAVLDSSLSEVFRSRAHRDFVRDATWSPLNHSLLTTVGWDH 320 
WD40-rpts      )   (_________________WD 6_________________)(__________________WD 7_____________

Query      321 QVIHHVVPLEPLPNPGPDSVVE 342 
WD40-rpts      _____)                

7 WD40-repeats found in QUERY=ENSMUSP00000010278 (Len=342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-60       5.39  337.46  0.00176       12.5%     33.32
  WD 2:  Seg  5    70-107      6.60  387.40  0.00037       15.0%     49.17
  WD 3:  Seg 10   117-153      9.05  488.63  1.6e-05       32.5%     44.14
  WD 4:  Seg 13   157-196      8.54  467.50  3.1e-05       35.0%     54.98
  WD 5:  Seg 17   200-241      6.91  400.18  0.00025       22.5%     50.87
  WD 6:  Seg 21   245-284      8.82  478.88  2.2e-05       37.5%     56.57
  WD 7:  Seg 25   285-326      6.39  378.75  0.00049       15.0%     57.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-60     NL-P-PNAPACMERQ--LEAARYRS-DG-S-L-LLGVSSLSGRCWVGSLWF
   WD 2   70-107    -E-GFCSAGVQTEAG--VADLTWVG-DK-G---ILVASD----SGAVELWE
   WD 3  117-153    ----SKFCKYEHDDI--VSTVTVLS-SG-T-Q-AVSGSK----DCCIKIWD
   WD 4  157-196    -Q-VSLNSYRAHAGQ--VTCVAASP-HK-D-SVFLSCSE----DSRILLWD
   WD 5  200-241    -P-KPASQMACNASGYLPTALAWHPQQS-E-V-FVFGDE----NGSVSLVD
   WD 6  245-284    -A-SCTLSSAVHSQG--VTRLVFSP-HSVP-L-LTSLSE----DCSLAVLD
   WD 7  285-326    SSLSEVFRSRAHRDF--VRDATWSP-LN-HSL-LTTVGW----DHQVIHHV

   WD40 Template    TG-ECLRTLSGHTSG--VTSVSFSP-DG-K-R-LVSGSE----DGTIKVWD