Input parameters:

  Query = ENSMUSP00000014562 (Len=1126)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000014562, Len=1126):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLRCTSIAVSRKWLALGSTGGGLNLIQKDGWKQRLFLSHREGAISQI 80  
WD40-rpts                                  (_____________WD 1_____________)   (________________

Query       81 ACCSHDDDYVAVATSQGLVVVWELNQERRGKPERIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKA 160 
WD40-rpts      _WD 2_________________) (_____________________WD 3____________________)         

Query      161 AAAFVMFPVQTVLTVDSCVVQLDYLDGRLLVSSLTRSFLCDTEREKFWKIGNKERHGEYGACFFPGRCAGGQQPVIYCAR 240 
WD40-rpts                                                                                      

Query      241 PGSRMWEVNFDGEVLSTHQFKKLLSMPPLPVITARSEPQYDHTVGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQ 320 
WD40-rpts                                                                                      

Query      321 VLLWSEVKDIQDVAVYKNELFCLHFNGKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEH 400 
WD40-rpts                                                                                      

Query      401 LKSQLDLTACSELISQLDDLILRFEPLESACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTFSEDER 480 
WD40-rpts                                                                                      

Query      481 LKEFASHQEEEQPEQGCGANRNEESASHSPVMSEVDKSEAFLPFSIALPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTL 560 
WD40-rpts                                                                                      

Query      561 HGSPELKEPFESKDADRAHEEEVSAVTCPLEEDTEEKEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLE 640 
WD40-rpts                                                                                      

Query      641 WLSQLEKTFAMKDFPGISNTSSPTVKSNLGAHLLGETEKRVLDEESGEGRRVSLVTEEAGGQITCDPVSNLSEPSADRFR 720 
WD40-rpts                                                                                      

Query      721 VCSPYAITNSLQRDLAELTTLCLELNVLTSAMESVGGHVDRASQQLSPEILACRFLKKYFFLLDLKRAKESIKLTYDSPC 800 
WD40-rpts                                                                                      

Query      801 VWDTFVEGLKEMARSNPAYTELEEGDLPTGLQLLDGSVPSDSPLLIAFATRLYDRFGESALRACIKFYPSISPSDIAQLC 880 
WD40-rpts                                                                                      

Query      881 RHHPAQFLAYLDSLVKSRPEDQWPSFLEFLLQPESLRLEWLLLAVSHDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILLL 960 
WD40-rpts                                                                                      

Query      961 IKLPADFTTKEKMTDICRSYGFWPGYLTLCLELERRREAFTNIVYLNDISLMEGDNGWIPETLEEWKLLLHLLQTKSTRP 1040
WD40-rpts                                                                                      

Query     1041 APQESLNGSLSDGPAPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRIAERRQRALIQGMLEKCDRF 1120
WD40-rpts                                                                                      

Query     1121 LWSQQA 1126
WD40-rpts            

3 WD40-repeats found in QUERY=ENSMUSP00000014562 (Len=1126):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    29-60       2.85  232.41  0.04498       17.5%     42.68
  WD 2:  Seg  4    64-103      3.89  275.30  0.01208       17.5%     50.96
  WD 3:  Seg  8   105-151      3.35  253.12  0.02390       15.0%     38.82

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-60     ---------------RLDSSRLRCTS-IAVSRKWLALGSTGGGLNLIQ
   WD 2   64-103    -WKQRL-------FLSHREGAISQIACCSHDDDYVAVATSQGLVVVWE
   WD 3  105-151    NQERRGKPERIHVSSEHKGRKVTALC-WDTAVLRVFVGDHVGKVSAIK

   WD40 Template    TGECLR-------TLSGHTSGVTSVS-FSPDGKRLVSGSEDGTIKVWD