Input parameters:

  Query = ENSMUSP00000014691 (Len=400)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000014691, Len=400):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIQPQPLTRKPILLQRVEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHAMPSPCSCMSFNPET 80  
WD40-rpts                   (_________________WD 1________________)(___________________WD 2____

Query       81 RRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMVLFVLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASG 160 
WD40-rpts      _______________)       (_________________WD 3________________)   (______________

Query      161 LQFDVETRHVFIGDHSGQVTILKLEQENCTLLTSFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQG 240 
WD40-rpts      __WD 4________________)     (_________________WD 5________________)(____________

Query      241 HNDKVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQMWDSKKIGLRQHHCRKCGKA 320 
WD40-rpts      _______WD 6__________________)(__________________WD 7_________________)_________

Query      321 VCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTATFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS 400 
WD40-rpts      _____WD 8_______________)          (_________________WD 9________________)      

9 WD40-repeats found in QUERY=ENSMUSP00000014691 (Len=400):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-52       8.68  473.17  2.6e-05       27.5%     56.88
  WD 2:  Seg  5    53-96       7.86  439.16  7.5e-05       25.0%     52.29
  WD 3:  Seg  9   104-142      8.00  445.26  6.2e-05       20.0%     56.64
  WD 4:  Seg 13   146-183      6.39  378.70  0.00049       12.5%     54.29
  WD 5:  Seg 17   189-227      9.69  514.80  7.2e-06       37.5%     56.74
  WD 6:  Seg 21   228-270      9.06  488.90  1.6e-05       32.5%     59.09
  WD 7:  Seg 25   271-311      2.95  236.49  0.03972       12.5%     32.35
  WD 8:  Seg 28   309-345      6.50  383.35  0.00042        7.5%     53.35
  WD 9:  Seg 32   356-394      8.20  453.56  4.8e-05       22.5%     56.51

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-52     -P---I----LLQRVEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWL
   WD 2   53-96     KR---DSGQYWPSIYHAMPSPCSCMSFNPETRRLSIGLDNGTISEFI
   WD 3  104-142    -M---T----PVKNYQAHQSRVTMVLFVLELEWVLSTGQDKQFAWHC
   WD 4  146-183    -G---Q----RLGGYRTS-AVASGLQFDVETRHVFIGDHSGQVTILK
   WD 5  189-227    -C---T----LLTSFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWD
   WD 6  228-270    IGGRKG----TAIELQGHNDKVQALSYAQHTRQLISCGGDGGIVVWN
   WD 7  271-311    MD--VE----RQETPEWLDSDSCQKCDQPFFWNFKQMWDSKKIGLRQ
   WD 8  309-345    ----------LRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCD
   WD 9  356-394    -R---A----PTATFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWD

   WD40 Template    TG---E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD