Input parameters:

  Query = ENSMUSP00000015239 (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000015239, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEGGLPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWKEQFYRYYQVARDVPRHPAATSWYEEFRRLYDMV 80  
WD40-rpts                                                                                      

Query       81 PCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISLLHSADMRPYNWSYTQFSQFNQDDSLLLASGVFL 160 
WD40-rpts       (_________________WD 1________________)                                        

Query      161 GPHNSSSGEIAVISLDSFALLSRVRNKPYDVFGCWLTETSLISGNLHRIGDITSCSVLWLNNAFQDVESENVNVVKRLFK 240 
WD40-rpts                                                                                      

Query      241 IQNLNASTIRTVMVADCSRFDSPDLLLDASDQAGLPCRVFDLGGDTEEEATDPGLHTSGSDHVKKGLRRVFDSVLDGHGQ 320 
WD40-rpts        (_________________WD 2________________)   (_________________WD 3______________

Query      321 LSDCALETKVAELLAQGHTKPPECNDADTRNKYLIFTTGCLTYSPHQIGIKQILPHQMTTAGPVLGEGRGSDAFFDALDH 400 
WD40-rpts      __)           (______________WD 4_____________)(_________________WD 5___________

Query      401 VIDVHGHIIGMGLSPDNRYLYVNSRAWPPGSVVADPMQPPPIAEEIDLLVFDLKTMREVKRALRAHRAYTPNDECFFIFL 480 
WD40-rpts      _____)       (_________________WD 6________________)           (________________

Query      481 DVSRDFVASGAEDRHGYIWDRHYNICLAKLRHEDVVNSVAFSPQEQELLLTASDDATIKAWRSPRIVRVLQAPRPRPRPR 560 
WD40-rpts      WD 7_______________)   (_________________WD 8________________)                  

Query      561 PRPFFSWFASHRR 573 
WD40-rpts                   

8 WD40-repeats found in QUERY=ENSMUSP00000015239 (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    82-120      9.56  509.77  8.4e-06       37.5%     53.75
  WD 2:  Seg 16   243-281      5.92  359.10  0.00090       20.0%     11.26
  WD 3:  Seg 18   285-323      4.13  285.13  0.00892       12.5%     14.03
  WD 4:  Seg 21   335-367      4.49  300.04  0.00562       15.0%     13.24
  WD 5:  Seg 23   368-406      6.40  379.11  0.00048       15.0%     24.73
  WD 6:  Seg 27   414-452      5.95  360.40  0.00086       17.5%      7.04
  WD 7:  Seg 30   464-500      6.45  381.10  0.00045       17.5%     42.69
  WD 8:  Seg 33   504-542      7.47  423.13  0.00012       42.5%     52.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   82-120    -CVEVQTLKEHTDQVLHLSFSH-SGYQFASCSKDCTVKIWN
   WD 2  243-281    -NLNASTIRTVMVADCSRFDSP-DLLLDASDQAGLPCRVFD
   WD 3  285-323    -DTEEEATDPGLHTSGSDHVKK-GLRRVFDSVLDGHGQLSD
   WD 4  335-367    -------AQGHTKPPECNDADT-RNKYLIFTTGCLTYSPHQ
   WD 5  368-406    -IGIKQILPHQMTTAGPVLGEG-RGSDAFFDALDHVIDVHG
   WD 6  414-452    SPDN-RYLYVNSRAWPPGSVVA-DPMQPPPIAEEIDLLVFD
   WD 7  464-500    RAHRAYT---PNDECFFIFLDV-SRDFVASGAEDRHGYIWD
   WD 8  504-542    -NICLAKL-RHEDVVNSVAFSPQEQELLLTASDDATIKAWR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD