Input parameters:

  Query = ENSMUSP00000016602 (Len=449)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000016602, Len=449):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSDVRDLNALLPAVSSLGGGGGGCGLPVSGAAQWAPVLDFAPPGASAYGSLGGPAPPPAPPPPPPPPHSFIKQEPSWGG 80  
WD40-rpts      (_________________WD 1_________________)                                        

Query       81 AEPHEEQCLSAFTLHFSGQFTGTAGACRYGPFGPPPPSQASSGQARMFPNAPYLPSCLESQPTIRNQGYSTVTFDGAPSY 160 
WD40-rpts                                                                                      

Query      161 GHTPSHHAAQFPNHSFKHEDPMGQQGSLGEQQYSVPPPVYGCHTPTDSCTGSQALLLRTPYSSDNLYQMTSQLECMTWNQ 240 
WD40-rpts                                                                                      

Query      241 MNLGATLKGMAAGSSSSVKWTEGQSNHGTGYESENHTAPILCGAQYRIHTHGVFRGIQDVRRVSGVAPTLVRSASETSEK 320 
WD40-rpts                                                                                      

Query      321 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 400 
WD40-rpts                                                                                      

Query      401 HTRTHTGKTSEKPFSCRWHSCQKKFARSDELVRHHNMHQRNMTKLQLAL 449 
WD40-rpts                                                       

1 WD40-repeats found in QUERY=ENSMUSP00000016602 (Len=449):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       3.18  246.12  0.02962       22.5%     -1.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MGSDVRDLNALLPAVSSLGGGGGGCGLPVSGAAQWAPVLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD