Input parameters:

  Query = ENSMUSP00000017821 (Len=421)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000017821, Len=421):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASFPPRVNEKEIVRSRTIGELLAPAAPFDKKCGGENWTVAFAPDGSYFAWSQGYRIVKLVPWSQCRKNFLLHGSKNVTN 80  
WD40-rpts                     (_____________________WD 1____________________)   (______________

Query       81 SSCLKLARQNSNGGQKNKPPEHVIDCGDIVWSLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTG 160 
WD40-rpts      ___WD 2________________)           (__________________WD 3_________________)   (

Query      161 KLLLNLVDHIEMVRDLTFAPDGSLLLVSASRDKTLRVWDLKDDGNMVKVLRAHQNWVYSCAFSPDCSMLCSVGASKAVFL 240 
WD40-rpts      _________________WD 4_________________)    (_________________WD 5_______________

Query      241 WNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYVWDPHNGDLLMEFGHLFPSPTPIFAGGANDRWVRAVSFS 320 
WD40-rpts      _)   (_________________WD 6________________)                (_________________WD

Query      321 HDGLHVASLADDKMVRFWRIDEDCPVQVAPLSNGLCCAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHICRMSIRRVMS 400 
WD40-rpts       7________________)(_________________WD 8_________________)__________________WD 

Query      401 TQEVQKLPVPSKILAFLSYRG 421 
WD40-rpts      9__________________) 

9 WD40-repeats found in QUERY=ENSMUSP00000017821 (Len=421):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-62       6.44  380.88  0.00046       17.5%     46.88
  WD 2:  Seg  5    66-104      6.84  397.11  0.00028       10.0%     41.70
  WD 3:  Seg  9   116-156      7.78  436.20  8.2e-05       25.0%     52.79
  WD 4:  Seg 13   160-199      9.18  493.95  1.4e-05       45.0%     55.63
  WD 5:  Seg 17   204-242      9.34  500.67  1.1e-05       30.0%     55.66
  WD 6:  Seg 21   246-284     10.06  530.11  4.5e-06       40.0%     55.91
  WD 7:  Seg 26   301-339      8.16  451.76  5.1e-05       25.0%     45.69
  WD 8:  Seg 29   340-379      8.21  453.98  4.7e-05       27.5%     51.13
  WD 9:  Seg 32   378-420      6.08  365.66  0.00073       10.0%     29.14

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-62     SRTIGELLAPAAPFDKKCGGENW--TVAFAPDGSYF-AWSQGYRIVKLVP
   WD 2   66-104    -CRKNFLLH-------GSKNVTN--SSCLKLARQNS-NGGQKNKPPEHVI
   WD 3  116-156    -GSSVPEKQ-------SRCVNIEWHRFRFGQDQLLL-ATGLNNGRIKIWD
   WD 4  160-199    -GKLLLNLV-------DHIEMVR--DLTFAPDGSLLLVSASRDKTLRVWD
   WD 5  204-242    -GNMVKVLR-------AHQNWVY--SCAFSPDCSML-CSVGASKAVFLWN
   WD 6  246-284    -YTMIRKLE-------GHHHDVV--ACDFSPDGALL-ATASYDTRVYVWD
   WD 7  301-339    -PTPIFAGG-------ANDRWVR--AVSFSHDGLHV-ASLADDKMVRFWR
   WD 8  340-379    IDEDCPVQV-------APLSNGL--CCAFSTDGSVL-AAGTHDGSVYFWA
   WD 9  378-420    -WATPRQVP---SLQHICRMSIR--RVMSTQEVQKL-PVPSKILAFLSYR

   WD40 Template    TGECLRTLS-------GHTSGVT--SVSFSPDGKRL-VSGSEDGTIKVWD