Input parameters:

  Query = ENSMUSP00000019220 (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000019220, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMEERAAAAVASAASSCRPLGSGTAPNPTAAAPASSPAPGPGPVGKGGGGGGSPGPTAGPEPLSLPGILHFIQHEWARFE 80  
WD40-rpts                                                                                      

Query       81 AEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTDLNQGEKKTDLSEQVSNGPVE 160 
WD40-rpts                                                                                      

Query      161 SVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELNGAGEPVEGAPRASPGPGGLSGGESLLVKQI 240 
WD40-rpts                                                                                      

Query      241 EEQIKRNAAGKDGKERLGGSVLEQIPFLQNCEDEDSDEDDELDSVQHKKQRVRLPSKALVPEMEDEDEEDDSEDAINEFD 320 
WD40-rpts                                                                                   (__

Query      321 FLGSGEDGEGSPDPRRCTSEGNPHELESRRVKLQGILADLRDVDGLPPKVTVPPPGTPQPRPHEGSFGFSSDVFIMDTIG 400 
WD40-rpts      ____________WD 1_____________)       (_________________WD 2_________________)   

Query      401 GGEVSLGDLADLTVTNDNDLSCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTA 480 
WD40-rpts                                     (__________________WD 3__________________)       

Query      481 KKNAALDVEPIHAFRAHRGPVLAVTMGSNSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVWGLAFS 560 
WD40-rpts             (_________________WD 4________________)              (_________________WD

Query      561 PTSQRLASCSADGTVRIWDPSSSGPSCLCTFPMDGEHGIPTSVAFTSTEPAHVVASFRSGDTVLYDLEAGSALLTLESRG 640 
WD40-rpts       5________________)(_____________________WD 6____________________)   (__________

Query      641 SSGPAQINQVVSHPSQPLTITAHDDRGIRFLDNRTGKSVHSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWSLDNKTC 720 
WD40-rpts      _________WD 7__________________)   (_________________WD 8________________)(_____

Query      721 VQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV 760 
WD40-rpts      _______________WD 9____________________)

9 WD40-repeats found in QUERY=ENSMUSP00000019220 (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   318-350      4.05  281.97  0.00983       15.0%      4.59
  WD 2:  Seg  2   358-397      4.53  301.67  0.00534       15.0%     19.52
  WD 3:  Seg  7   432-473      9.26  497.33  1.2e-05       35.0%     43.23
  WD 4:  Seg 11   488-526      7.78  435.89  8.3e-05       22.5%     51.10
  WD 5:  Seg 15   541-579      9.37  501.58  1.1e-05       40.0%     46.94
  WD 6:  Seg 19   580-626      6.26  373.16  0.00058       22.5%     46.72
  WD 7:  Seg 22   630-672      6.83  396.86  0.00028       25.0%     57.04
  WD 8:  Seg 26   676-714      9.79  519.09  6.3e-06       30.0%     56.10
  WD 9:  Seg 30   715-760      6.47  381.97  0.00044       20.0%     46.95

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  318-350    EF------D------FL-------GS----GEDGEGSP-DPRRCT-----SEGNPHELESRR
   WD 2  358-397    -----------------ADLRDVDGL----PPKVTVPP-PGTPQPRPHEGSFGFSSDVFIMD
   WD 3  432-473    KK----TWN------PKFTLRSHYDG----IRSLAFHH-SQSALL-----TASEDGTLKLWN
   WD 4  488-526    -V------E------PIHAFRAHRGP----VLAVTMGS-NSEYCY-----SGGADARIHSWK
   WD 5  541-579    -S------V------LSHVLEGHGDA----VWGLAFSP-TSQRLA-----SCSADGTVRIWD
   WD 6  580-626    PS------SSGPSCLCTFPMDGEHGI----PTSVAFTSTEPAHVV-----ASFRSGDTVLYD
   WD 7  630-672    -G------S------ALLTLESRGSSGPAQINQVVSHP-SQPLTI-----TAHDDRGIRFLD
   WD 8  676-714    -G------K------SVHSMVAHLDA----VTCLAVDP-NGVFLM-----SGSHDCSLRLWS
   WD 9  715-760    LDNKTCVQE------ITAHRKKHEEA----IHAVACHP-SKALIA-----SAGADALAKVFV

   WD40 Template    TG------E------CLRTLSGHTSG----VTSVSFSP-DGKRLV-----SGSEDGTIKVWD