Input parameters:

  Query = ENSMUSP00000020113 (Len=476)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020113, Len=476):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASR 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIV 160 
WD40-rpts      _______)   (_________________WD 3________________)   (_________________WD 4_____

Query      161 SCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLG 240 
WD40-rpts      ___________)   (_________________WD 5________________)   (_________________WD 6_

Query      241 NSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIWRTNFIHLHCKDPKRNLKRLHFEA 320 
WD40-rpts      _______________)   (_________________WD 7________________)(____________________W

Query      321 SPHLLDIYPRSPHSHEDRKETIEINPKREVMDLQSSSPPVVDVLSFDSTTMTDSTYRAVPGKGEDICRYFLNPLLMPECS 400 
WD40-rpts      D 8___________________)  (_______________WD 9______________)                    

Query      401 STTVKKRPEDVSDVPSESLRSVPLAVADALEHIMEQLNILTQTVSILEQRLSLTEDKLRDCLENQQKLFSAVQQKS 476 
WD40-rpts                                                                                  

9 WD40-repeats found in QUERY=ENSMUSP00000020113 (Len=476):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       9.43  504.09  1.0e-05       30.0%     51.35
  WD 2:  Seg  5    50-88       9.81  519.86  6.1e-06       37.5%     56.81
  WD 3:  Seg  9    92-130     10.06  530.39  4.4e-06       45.0%     54.13
  WD 4:  Seg 13   134-172     10.54  550.10  2.4e-06       50.0%     56.07
  WD 5:  Seg 17   176-214      9.86  521.80  5.8e-06       27.5%     53.10
  WD 6:  Seg 21   218-256     10.05  529.85  4.5e-06       40.0%     57.04
  WD 7:  Seg 25   260-298     10.40  544.32  2.9e-06       45.0%     55.66
  WD 8:  Seg 29   299-343      6.13  367.85  0.00069       10.0%     43.16
  WD 9:  Seg 33   346-380      4.55  302.53  0.00520       17.5%     38.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     DPILERSFKGHKAAITSADFSPNCKQIA-----TASWDTFLMLWS
   WD 2   50-88     -HARAYRYVGHKDVVTSLQFSPQGNLLA-----SASRDRTVRLWV
   WD 3   92-130    -KGKSSEFKAHTAPVRSVDFSADGQLLV-----TASEDKSIKVWS
   WD 4  134-172    -QRFLYSLYRHTHWVRCAKFSPDGRLIV-----SCSEDKTIKIWD
   WD 5  176-214    -KQCVNNFSDSVGFANFVDFNPNGTCIA-----SAGSDHAVKIWD
   WD 6  218-256    -NKLLQHYQVHSCGVNCLSFHPLGNSLV-----TASSDGTVKMLD
   WD 7  260-298    -GRLIYTLQGHTGPVFTVSFSKDGELLT-----SGGADAQVLIWR
   WD 8  299-343    TNFIHLHCKDPKRNLKRLHFEASPHLLDIYPRSPHSHEDRKETIE
   WD 9  346-380    PKREVMDLQSSSPPVVDV-LSFDS---------TTMTDSTYRAVP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV-----SGSEDGTIKVWD