Input parameters:

  Query = ENSMUSP00000020157 (Len=1249)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020157, Len=1249):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAKARNCLLQHREALEKDIKTSYIMDHMISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEGY 80  
WD40-rpts                                                                                      

Query       81 KDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGK 160 
WD40-rpts                                                                                      

Query      161 SVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLL 240 
WD40-rpts                                                                                      

Query      241 ILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 
WD40-rpts                                                                                      

Query      321 PLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400 
WD40-rpts                                                                                      

Query      401 CVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDC 480 
WD40-rpts                                                                                      

Query      481 MYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPF 560 
WD40-rpts                                                                                      

Query      561 PNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQ 640 
WD40-rpts                                                       (______________WD 1____________

Query      641 VFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720 
WD40-rpts      __)   (_________________WD 2________________)   (__________________WD 3_________

Query      721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 
WD40-rpts      ________)   (_________________WD 4________________)           (_________________

Query      801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880 
WD40-rpts      __WD 5___________________)   (_________________WD 6________________)   (________

Query      881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960 
WD40-rpts      _________WD 7________________)(_________________WD 8_________________)(_________

Query      961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040
WD40-rpts      ________WD 9________________)   (_________________WD10________________)  (______

Query     1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
WD40-rpts      __________WD11________________)   (_________________WD12________________)   (___

Query     1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1200
WD40-rpts      ______________WD13________________)          (_________________WD14_____________

Query     1201 KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
WD40-rpts      ___)   (_________________WD15________________)   

15 WD40-repeats found in QUERY=ENSMUSP00000020157 (Len=1249):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   610-643      7.45  422.47  0.00013       30.0%     49.31
  WD 2:  Seg 16   647-685      9.33  500.16  1.1e-05       32.5%     56.53
  WD 3:  Seg 20   689-729      8.05  447.14  5.9e-05       30.0%     55.42
  WD 4:  Seg 24   733-771     10.40  544.11  2.9e-06       47.5%     56.44
  WD 5:  Seg 29   783-826      5.90  358.21  0.00093       12.5%     38.93
  WD 6:  Seg 32   830-868      8.32  458.21  4.2e-05       22.5%     52.77
  WD 7:  Seg 36   872-910      9.71  515.60  7.0e-06       40.0%     56.66
  WD 8:  Seg 40   911-950      6.71  391.97  0.00032        7.5%     46.29
  WD 9:  Seg 43   951-989      7.67  431.32  9.6e-05       25.0%     46.21
  WD10:  Seg 46   993-1031     9.60  511.17  8.0e-06       37.5%     58.22
  WD11:  Seg 50  1034-1071     6.99  403.28  0.00023       35.0%     51.95
  WD12:  Seg 54  1075-1113     8.96  484.97  1.8e-05       32.5%     57.30
  WD13:  Seg 58  1117-1155     9.39  502.74  1.0e-05       35.0%     57.28
  WD14:  Seg 63  1166-1204     6.33  376.03  0.00053       37.5%     41.33
  WD15:  Seg 66  1208-1246     7.38  419.57  0.00014       17.5%     55.48

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  610-643    ------V----VRPHTDAVYHACFSQDGQR--IASCGADKTLQVFK
   WD 2  647-685    -GEKLLD----IKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWD
   WD 3  689-729    -GKLVHT----YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD
   WD 4  733-771    -KECRNT----MFGHTNSVNHCRFSPDDEL--LASCSADGTLRLWD
   WD 5  783-826    VKRFFLSSEDPPEDVEVIVKCCSWSADGDK--IIVAAKNKVLLFDI
   WD 6  830-868    -GLLAEI----HTGHHSTIQYCDFSPYDHL--AVIALSQYCVELWN
   WD 7  872-910    -RLKVAD----CRGHLSWVHGVMFSPDGSS--FLTASDDQTIRVWE
   WD 8  911-950    TKKVCKN----SAIVLKQEIDVVFQENETM--VLAVDNIRGLQLIA
   WD 9  951-989    -GKTGQI----DYLPEAQVSCCCLSPHLEY--VAFGDEDGAIKIIE
   WD10  993-1031   -NRVFSS----GVGHKKAVRHIQFTADGKT--LISSSEDSVIQVWN
   WD11 1034-1071   -TGDYVF----LQAHQETVKDFRLLQDS-R--LLSWSFDGTVKVWN
   WD12 1075-1113   -GRIERD----FTCHQGTVLSCAISSDATK--FSSTSADKTAKIWS
   WD13 1117-1155   -LSPLHE----LKGHNGCVRCSAFSLDGIL--LATGDDNGEIRIWN
   WD14 1166-1204   APISVEE---GTATHGGWVTDVCFSPDSKT--LVSAG--GYLKWWN
   WD15 1208-1246   -GDSSQT----FYTNGTNLKKIHVSPDFRT--YVTVDNLGILYILQ

   WD40 Template    TGECLRT----LSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD