Input parameters:

  Query = ENSMUSP00000020163 (Len=660)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020163, Len=660):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQENLRFASSGDDVKIWDASFLTLVDKFNPHTSPHGISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELAEGQKQ 80  
WD40-rpts                           (__________________WD 1_________________)(_________________

Query       81 TCVDLNSTSMYLASGGLNNTVNIWDLKSKRLHRSLKDHKCEVTCVAYNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHG 160 
WD40-rpts      __WD 2__________________)   (_________________WD 3________________)    (________

Query      161 SKQPIRHIKYSLFRKSLLGSVSDNGVVTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKK 240 
WD40-rpts      _________WD 4_________________)   (__________________WD 5_________________)   (_

Query      241 LVKTLVADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTSVQCIAFQYSTSLTKASLSKGSSNKATA 320 
WD40-rpts      _______________WD 6________________)    (___________________WD 7________________

Query      321 VNKRSVPVSSSSGAAQNSGIVREAPSPSIATVLPQPVTTALGKGSGAAQDEAGLARSKSTDIFSKETDAGKSQDFSSFDD 400 
WD40-rpts      __)(_______________________WD 8______________________)  (_________________WD 9__

Query      401 TGKNSLGDMFSPIRDDAVVSKGGDESIGKGDGLDFLPQLNSVFPLRKNAGASSSLVLHSSPLNVLMGSSGKEENESHEPS 480 
WD40-rpts      ______________)                                 (_________________WD10__________

Query      481 AESKRAYLGKQEPKDAMKQFTKLISSGAEPGILNTCPSSNQARNLEKFEKPEKDIEAQLIHEPSVNGSSTTVPKAASSVT 560 
WD40-rpts      ______)   (_________________WD11________________)                               

Query      561 AGVASSLSEKIVDTLGNSRPGAPLTSVQIRFIQNMIQETLDDFREACHRDIVNLQVEMIKQFHIQLNEMHSLLERYSVNE 640 
WD40-rpts                                                                                      

Query      641 GLVAEIERLREENKRLRAHF 660 
WD40-rpts                          

11 WD40-repeats found in QUERY=ENSMUSP00000020163 (Len=660):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-62       7.39  419.83  0.00014       27.5%     52.67
  WD 2:  Seg  7    63-105      7.77  435.69  8.4e-05       22.5%     50.68
  WD 3:  Seg 11   109-147      8.71  474.27  2.5e-05       27.5%     56.77
  WD 4:  Seg 15   152-191      6.41  379.60  0.00048       22.5%     48.89
  WD 5:  Seg 19   195-235      6.25  372.74  0.00059       27.5%     57.07
  WD 6:  Seg 23   239-276      8.15  451.53  5.1e-05       37.5%     57.12
  WD 7:  Seg 27   281-323      6.74  393.15  0.00031       22.5%     44.80
  WD 8:  Seg 31   324-374      3.71  267.93  0.01516       17.5%     39.55
  WD 9:  Seg 35   377-415      7.79  436.34  8.2e-05       17.5%     30.72
  WD10:  Seg 38   449-487      5.55  343.91  0.00144       15.0%      6.66
  WD11:  Seg 40   491-529      5.70  349.91  0.00120       10.0%     19.91

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-62     -LTLV---DKF-NP-----------HTSPHGISSICWSSN----NN-FL-VTASSSGDKIVVS
   WD 2   63-105    SCKCKPVPLLE-LA-----------EGQ--KQTCVDLNST----SM-YL-ASGGLNNTVNIWD
   WD 3  109-147    -KRLH---RSL-KD-----------HKC--EVTCVAYNWN----DC-YI-ASGSLSGEIILHS
   WD 4  152-191    -TSST---PFG-HG-----------SKQ--PIRHIKYSLF----RKSLL-GSVSDNGVVTLWD
   WD 5  195-235    -QSSY---HTFDST-----------HKA--PASGICFSPV----NE-LLFVTIGLDKRIILYD
   WD 6  239-276    -KKLV---KTL-VA-----------DTP---LTAVDFMPD----GA-TL-AIGSSRGKIYQYD
   WD 7  281-323    -KSPV---KTI-SA-----------HKT--SVQCIAFQYSTSLTKA-SL-SKGSSNKATAVNK
   WD 8  324-374    RSVPV---SSS-SGAAQNSGIVREAPSP--SIATVLPQPV----TT-AL-GKGSGAAQDEAGL
   WD 9  377-415    -SKST---DIF-SK-----------ETD--AGKSQDFSSF----DD-TG-KNSLGDMFSPIRD
   WD10  449-487    -AGAS---SSL-VL-----------HSS--PLNVLMGSSG----KE-EN-ESHEPSAESKRAY
   WD11  491-529    -QEPK---DAM-KQ-----------FTK--LISSGAEPGI----LN-TC-PSSNQARNLEKFE

   WD40 Template    TGECL---RTL-SG-----------HTS--GVTSVSFSPD----GK-RL-VSGSEDGTIKVWD