Input parameters:

  Query = ENSMUSP00000020182 (Len=318)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000020182, Len=318):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAARTLRVPGRHGYAAEFSPYLPGRLACAAAQHYGIAGCGTLLVLDQNESGLQIFRSFDWNDGLFDVTWSENNEHVLVT 80  
WD40-rpts      (_____________________WD 1____________________)    (_________________WD 2_______

Query       81 CSGDGSLQLWDTAKATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPTVGNSLCTFRGHESVIYSTIWSP 160 
WD40-rpts      __________)(____________________WD 3___________________)   (_________________WD 

Query      161 HIPGCFASASGDQTLRIWDVKTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAI 240 
WD40-rpts      4_________________)   (_________________WD 5_________________)    (_____________

Query      241 RRVKFSPFHASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCSWDETIKIYDPVCLTVPG 318 
WD40-rpts      ____WD 6_________________)    (_________________WD 7_________________)        

7 WD40-repeats found in QUERY=ENSMUSP00000020182 (Len=318):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       5.72  350.98  0.00116       27.5%     45.07
  WD 2:  Seg  5    52-91       7.83  437.98  7.8e-05       27.5%     56.06
  WD 3:  Seg  9    92-136      8.46  464.23  3.4e-05       45.0%     50.59
  WD 4:  Seg 13   140-179      8.68  473.29  2.6e-05       37.5%     56.59
  WD 5:  Seg 17   183-222      7.67  431.65  9.5e-05       17.5%     54.39
  WD 6:  Seg 21   227-266      8.37  460.52  3.9e-05       35.0%     52.95
  WD 7:  Seg 24   271-310      7.26  414.56  0.00016       27.5%     47.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     -MS---AARTLRVPGRHGYAAEFSPYLP--GR-L-ACAAAQHYGIAGCGTLLVLD
   WD 2   52-91     -GL---QIFRSFDWNDGLFDVTWSE--N--NE-HVLVTCSGD------GSLQLWD
   WD 3   92-136    TAKATGPLQVYKEHTQEVYSVDWSQ--TRGEQ-L-VVSGSWD------QTVKVWD
   WD 4  140-179    -GN---SLCTFRGHESVIYSTIWSP--H-IPG-C-FASASGD------QTLRIWD
   WD 5  183-222    -TG---VRIVIPAHQTEILSCDWCK-YN--EN-L-VVTGAVD------CSLRGWD
   WD 6  227-266    -RQ---PVFELLGHTYAIRRVKFSP-FH--AS-V-LASCSYD------FTVRFWN
   WD 7  271-310    -DP---LLETVEHHTEFTCGLDLSL--Q--SPTQ-VADCSWD------ETIKIYD

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP--D--GK-R-LVSGSED------GTIKVWD